View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1612-INSERTION-1 (Length: 687)
Name: NF1612-INSERTION-1
Description: NF1612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1612-INSERTION-1 |
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Alignment Details
Target: chr3 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 9 - 681
Target Start/End: Complemental strand, 55178520 - 55177848
Alignment:
| Q |
9 |
cgtgtacagaggaaccctccccgatgggaagccggtggcaatcaaagttatgcagtcatcaaaagaagctttcaaagattttgcacttgaagttgaaata |
108 |
Q |
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| T |
55178520 |
cgtgtacagaggaaccctccccgatgggaagccggtggcaatcaaagttatgcagtcatcaaaagaagctttcaaagattttgcacttgaagttgaaata |
55178421 |
T |
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| Q |
109 |
atgtcctcgttgaaccacccacgcatcgctcctctgctagggatttgtattagagatgagacttcgatatctgtttatgattatttcccccaaggaacct |
208 |
Q |
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| T |
55178420 |
atgtcctcgttgaaccacccacgcatcgctcctctgctagggatttgcattagagatgagactttgatatctgtttatgattatttcccccaaggaacct |
55178321 |
T |
|
| Q |
209 |
tagaccaaaatctacgcggttagtcctactaatatttcttctcttttcacttatcattgtaactactagcctgtacacactaaatgcttttctgataaaa |
308 |
Q |
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| T |
55178320 |
tagaccaaaatctacgcggttagtcctactaatatttcttctcttttcacttatcattgtaactactagcctgtacacactaaatgcttttctgataaaa |
55178221 |
T |
|
| Q |
309 |
atggaagttacaaaattgaatgtaattaattaaaaatagaattagtatatatacactagaaagtggatatgatatattatttactgatgaaattggaaat |
408 |
Q |
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| T |
55178220 |
atggaagttacaaaattgaatgtaattaattaaaaatagaattagtatatatacactagaaagtggatatgatatattatttactgatgaaattggaaat |
55178121 |
T |
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| Q |
409 |
aatggatataggtaagaacaaggatgaatctatgttgacatgggaaaacagatttaaggtagctgttgggattggtgaagcactgaattacctgcacaag |
508 |
Q |
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| T |
55178120 |
aatggatataggtaagaacaaggatgaatctatgttgacatgggaagacagatttaaggtagctgttgggattggtgaagcactgaattacctgcacaag |
55178021 |
T |
|
| Q |
509 |
cacaaccaaacctccaagcctattatacatagagacgtcaagtcttccaacattcttctttctgaagggtttgagccacatgtaatcataactttgatac |
608 |
Q |
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| T |
55178020 |
cacaaccaaacctccaagcctattatacatagagacgtcaagtcttccaacattcttctttctgaagggtttgagccacatgtaatcataactttgatac |
55177921 |
T |
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| Q |
609 |
tattaactagaattgataattaatatcattttatgtttgaaatttttgattgtcatgtgacatgtacacattc |
681 |
Q |
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| T |
55177920 |
tattaactagaattgataattaatatcattttatgtttgaaatttttgattgtgatgtgacatgtacacattc |
55177848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 596
Target Start/End: Complemental strand, 27670576 - 27670513
Alignment:
| Q |
533 |
atacatagagacgtcaagtcttccaacattcttctttctgaagggtttgagccacatgtaatca |
596 |
Q |
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||||||||||| ||||||||||| |||||||||||||| | | | |||||||||| ||||||| |
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| T |
27670576 |
atacatagagatgtcaagtcttcaaacattcttctttccaaggagcttgagccacaagtaatca |
27670513 |
T |
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