View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1612-INSERTION-2 (Length: 665)
Name: NF1612-INSERTION-2
Description: NF1612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1612-INSERTION-2 |
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Alignment Details
Target: chr8 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 8 - 664
Target Start/End: Complemental strand, 21597483 - 21596827
Alignment:
| Q |
8 |
acgggaagtcgtcaaatttaacaccgttttttccttacggtgttaaaggtgtttttaacgctgcagctgttgtgtattggtcttataccggttttgatat |
107 |
Q |
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| T |
21597483 |
acgggaagtcttcaaatttaacaccgttttttccttacggtgttaaaggtgtttttaacgccgcagctgttgtgtattggtcttataccggtttcgatat |
21597384 |
T |
|
| Q |
108 |
ggttgcaactatggctgaagaaactaaaaacccttcaagagatatacctattggtttaattggttcaatgtctatgatcacggttatttattgtttaatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21597383 |
ggttgcaactatggctgaagaaactaaaaacccttctagagatatacctattggtttaattggttcaatgtctatgatcacggttatttattgtttgatg |
21597284 |
T |
|
| Q |
208 |
gcattggcacttgtgaatatggttaagtatagtgagattgatgttggagctgcttattcggttgcttttgttcaaattggtatgaaatggggtaaatatt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21597283 |
gcattggcacttgtgaatatggttaagtatagtgagattgatgctggagctgcttattcagttgcttttgttcaaattggtatgaaatggggtaaatatt |
21597184 |
T |
|
| Q |
308 |
tagtgagtatttgtgctttgaaaggaatgacaacaagtttgcttgttgggtcaatgggacaagctaggtatactactcaaattgcaaggtcacatatgat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
21597183 |
tagtgagtatttgtgctttgaaaggaatgacaacaagtttgcttgttgggtcaatgggacaagctaggtacactactcaaattgcaaggtcacaaatgat |
21597084 |
T |
|
| Q |
408 |
tccacccttttttgcacttattcatcctaaaactggaacacctattaatgctacacttttgacaactttgtcaagttgtgttgttgctctttttactagt |
507 |
Q |
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| T |
21597083 |
tccacccttttttgcacttattcatccaaaaactggaacacctattaatgctacacttttgacaactttgtcaagttgtgttgttgctctttttactagt |
21596984 |
T |
|
| Q |
508 |
ttggatgttctgtctagtgttttttctgtaagtactctgttcatctttatgcttatggctattgcgttgcttgtgaggagatattatgcgagggaatcaa |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
21596983 |
ttggatgttctgtctagtgttttttctgtaagtactctgttcatttttatgcttatggcgattgctttgcttgtgaggagatattatgcgagggaatcaa |
21596884 |
T |
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| Q |
608 |
cggataagagtgatttatggaaggttctttcgtgtttgtttgttgttgttggttctt |
664 |
Q |
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| T |
21596883 |
ctgataagagcgatttatggaaggttctttcgtgtttgtttgttgttgttggttctt |
21596827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 285 - 662
Target Start/End: Complemental strand, 11987370 - 11986993
Alignment:
| Q |
285 |
tggtatgaaatggggtaaatatttagtgagtatttgtgctttgaaaggaatgacaacaagtttgcttgttgggtcaatgggacaagctaggtatactact |
384 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11987370 |
tggtatgaaatggggtaaatatttagtgagtatttgttctttgaaaggaatgacaacaagtttgcttgttgggtcaatgggacaagctaggtacactact |
11987271 |
T |
|
| Q |
385 |
caaattgcaaggtcacatatgattccacccttttttgcacttattcatcctaaaactggaacacctattaatgctacacttttgacaactttgtcaagtt |
484 |
Q |
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| T |
11987270 |
caaattgcaaggtcacatatgattccacccttttttgcacttgttcatcccaaaactggaacacctattaatgctacacttttgacaactttgtcaagtt |
11987171 |
T |
|
| Q |
485 |
gtgttgttgctctttttactagtttggatgttctgtctagtgttttttctgtaagtactctgttcatctttatgcttatggctattgcgttgcttgtgag |
584 |
Q |
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| T |
11987170 |
gtgttgttgctctttttactagtgtggatgttctggctagtgttttttctgtaagtactcttttcatttttatgcttatggctattgcgttgcttgtgag |
11987071 |
T |
|
| Q |
585 |
gagatattatgcgagggaatcaacggataagagtgatttatggaaggttctttcgtgtttgtttgttgttgttggttc |
662 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11987070 |
gagatattatgcgagggaagcaacggataagagtgatttatggaaggttcttttgtgtttgtttgttgttgttggttc |
11986993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 15115655 - 15115555
Alignment:
| Q |
110 |
ttgcaactatggctgaagaaactaaaaacccttcaagagatatacctattggtttaattggttcaatgtctatgatcacggttatttattgtttaatggc |
209 |
Q |
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||||||| |||||||||||||||||||| || ||| || ||||| || || || ||||||||||||||| ||||||| ||||| ||||| || ||||| |
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| T |
15115655 |
ttgcaaccatggctgaagaaactaaaaatccgccaaaggacataccaataggcttgattggttcaatgtctgtgatcacagttatctattgcttgatggc |
15115556 |
T |
|
| Q |
210 |
a |
210 |
Q |
| |
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| |
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| T |
15115555 |
a |
15115555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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