View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1612-INSERTION-3 (Length: 651)
Name: NF1612-INSERTION-3
Description: NF1612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1612-INSERTION-3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 6 - 524
Target Start/End: Complemental strand, 31587828 - 31587285
Alignment:
| Q |
6 |
cacatgctgctaaccggggtaccgccatatgatatgataaacaatgttttgccagctctcc-ttgacaactttactaaacctaggttcaatatttcgaaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31587828 |
cacatgctgctaaccggggtaccgccatatgatatgataaacaatgttttgccagctctcccttgacaactttactaaacctaggttcaatatttcgaaa |
31587729 |
T |
|
| Q |
105 |
cgttttcattctcctcacttttgttgagaaggtagatttattttttaataaagaacat-aaagacaaaacttacacttaaca--nnnnnnnagagaagac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||||| |
|
|
| T |
31587728 |
cgttttcattctcctcacttttgttgagaaggtagatttattttttaataaagaacataaaagacaaaatttacacgtaacaattttttttagagaagac |
31587629 |
T |
|
| Q |
202 |
aact-------aatgggaaattgtaggttctaatatgcatccatacataccgttcaaacaacatttattttggttaaatacctcaatggttagaaattta |
294 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
31587628 |
aactaaatatcaatgggaaattgtagattctaacatgcatccatacataccgttcaaacaacatttattttggttaaatacttcaatggttagaaattca |
31587529 |
T |
|
| Q |
295 |
cctttgtaaagtgaataagtaagatgttcgaaattcgaactccgtcttctacatatattatac---------------tgatttaaattcgaactcattc |
379 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31587528 |
tctttataaggtgaataagtaagatgttcgaaattcgaactccgtcttctacatatattatacaacatctttaccaattgatttaaattcgaactcattc |
31587429 |
T |
|
| Q |
380 |
atacaacattttatcactatgtgaatgtttttggtggatacgcataattatgagtccgattgatcacagattcacatctatataataatcatgagttttg |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31587428 |
atacaacattttatcactatgtgaatgtttttggtggatacacataaatatgagtccgattgatcacagattcacatctatataataatcatgagttttg |
31587329 |
T |
|
| Q |
480 |
ttttttgtaatgatattaatattaaatcatgagtataatttatcc |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31587328 |
-tttttgtaatgatattaatattaaatcatgagtataatttatcc |
31587285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 555 - 651
Target Start/End: Complemental strand, 31587200 - 31587104
Alignment:
| Q |
555 |
aaaaataacgcgcatactcctctccttggggataatatgcttactgttgttcctttttatcaaacccaaattgagagttgcaacttgcaatgcaata |
651 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31587200 |
aaaaataacgcgcatgctcctctccttggggataatatgcttactggtgttcctttttatcaaacccaaattgagagttgcaacttgcaatgcaata |
31587104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University