View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_high_11 (Length: 338)
Name: NF16120_high_11
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 29262621 - 29262720
Alignment:
| Q |
184 |
agcataaaaacgtaactcatattaaacaagtagttttgttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaagttacatttta |
283 |
Q |
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| T |
29262621 |
agcataaaaacgtaactcatatgaaac---tagtttatttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaagttacatttta |
29262717 |
T |
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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 29262510 - 29262560
Alignment:
| Q |
100 |
taaaggtcatcagaactttccctttcttttttaaaaaaggtcaagtatttt |
150 |
Q |
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| T |
29262510 |
taaaggtcatcaaaactttccctttcttttctaataaaggtcaagtatttt |
29262560 |
T |
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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 27613189 - 27613279
Alignment:
| Q |
178 |
ctctcgagcataaaaacgtaactcatattaaacaagtagttttgttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaa |
272 |
Q |
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| T |
27613189 |
ctctcgagcataaaaacgtaactcat--taaataagtaaatttgttcctttcctgtc--gagctcatggaacttgggaagaaaatagttgatcaa |
27613279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 27613062 - 27613127
Alignment:
| Q |
78 |
ttaaattaaccatgctacaatataaaggtcatcagaactttccctttcttttttaaaaaaggtcaa |
143 |
Q |
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| T |
27613062 |
ttaaattaaccatgctacaatataaaggtaatcagaactttacttttctttttcaaaaaaggtcaa |
27613127 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 3062010 - 3062072
Alignment:
| Q |
190 |
aaaacgtaactcatattaaacaagtagttttgttcctttcctctctcgagttcatggaacttg |
252 |
Q |
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| T |
3062010 |
aaaatgtaattcatattaaacaagtcgttttgttcctttcctctttcgggttcaaggaacttg |
3062072 |
T |
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