View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_high_12 (Length: 330)
Name: NF16120_high_12
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 27054178 - 27053877
Alignment:
| Q |
13 |
tcaacttccattacagttcttacagcagccgttgccgacctctgtgaccgaggctggaaacacaaaattgcttttcctttagctaaggttgcattcagac |
112 |
Q |
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| T |
27054178 |
tcaacttccattacagttcttacagcagccgttgccgacctctgtgaccgaggctggaaacacaaaattgcttttcctttagctaaggttgcattcagac |
27054079 |
T |
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| Q |
113 |
ttcctgattcacagctcctgagcagaaaaaccatgagtatgcactttcacagccacgttcttaatgcaaaaatgcgacatattttaccttgcattttctt |
212 |
Q |
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| T |
27054078 |
ttcctgattcacagctcctgagcagaaaaaccatgagtatgcactttcacagccatgttcttaatgaaaaaatgcgacatattttaccttgcattttctt |
27053979 |
T |
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| Q |
213 |
tatctgcatctgaaactgatatatcttctccatatactattggataaaacttgtttaatattttccctgtatataagctctgaccctatatgaggaaata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27053978 |
tatctgcatctgaaactgatatatcttctccatatactattggataaaacttgtttaatattttccctgtatataagctctgaccctatatgaggaaata |
27053879 |
T |
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| Q |
313 |
aa |
314 |
Q |
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|| |
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| T |
27053878 |
aa |
27053877 |
T |
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