View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_high_13 (Length: 326)
Name: NF16120_high_13
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_high_13 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 30341923 - 30342223
Alignment:
| Q |
18 |
atggcatctatcctgtatcagtagataaacagaatagcaatagatagtgatgattaaatggaaatgtggaatgtggaaaaagggtctgcatacaaaacat |
117 |
Q |
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| T |
30341923 |
atggcatctatcctgcatcagtagataaaca-aatagcaatagatagtgatgattaaatggaaatgtggaatgtggaaaaagggtctgcatacaaaacat |
30342021 |
T |
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| Q |
118 |
tcctaagtcacactttattaacggttgtacaaaatcactaattattatatgtaagttcaagtgctgcactgatacatgcaatgtctaatctctcctattg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30342022 |
tcctaagtcacactttattaacggttgtacaaaatcactaattattatatgtaagttcaagtgctgcactgatacatgcaatctctaatctctcctattg |
30342121 |
T |
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| Q |
218 |
aactttctcaagattttgatgtataatcccctataagacataagacatggatacaattttgtgcaatcataattgacacgaacatcaaacaatacactga |
317 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30342122 |
aactttctcaagattttgatgtataatcccct-------ataagacatggatacaattttgtgcaatcatagttgacacgaacatcaaacaatacactga |
30342214 |
T |
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| Q |
318 |
cgcatatat |
326 |
Q |
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|||||||| |
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| T |
30342215 |
tgcatatat |
30342223 |
T |
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