View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_high_2 (Length: 500)
Name: NF16120_high_2
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 39 - 484
Target Start/End: Original strand, 37431 - 37883
Alignment:
| Q |
39 |
gtaattaaagtctttttatgttgtccacttaataattcatatgaaaatatgaacgaacgaacaaacaaattgtaaagtattggcaatggagtagtggtgg |
138 |
Q |
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| T |
37431 |
gtaattaaagtctttttatgttgtccacttaataattcatatgaaaatatgaacgaacgaacaaacaaattgtaaagtattggcaatggagtagtggtgg |
37530 |
T |
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| Q |
139 |
gttttggcggccttcgtgaaaagataataaaacaaacacatttga-------aacacatactaatggacttggtgcatatttcagtcagggaattgtttt |
231 |
Q |
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| T |
37531 |
gttttggcggccttcgtgaaaagataataaaacaaacacatttgaaagttgaaacacatactaatggacttggtgcatatttcagtcagggaattgtttt |
37630 |
T |
|
| Q |
232 |
tctagtgagatttggtaataaagttgtcttaaacaattgctttcagtgatattatataagagatttgtgtggtttgcgtcttttgcatatcatatggcca |
331 |
Q |
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| T |
37631 |
tctagtgagatttggtaataaagttgtcttaaacaattgctttcagtgatattatataagagatttgtgtggtttgcgtcttttgcatatcatatggcca |
37730 |
T |
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| Q |
332 |
gagttagtcctctggaagtttggcatcgggagtgtcctaaaagaaataagcacactattatagatggttcnnnnnnngaacaagactataaatgattctt |
431 |
Q |
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| T |
37731 |
gagttagtcctctggaagtttggcatcgggagtttcctaaaagaaataagcacactattatagatggttctttttttgaacaagactataaatgattctt |
37830 |
T |
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| Q |
432 |
aatagtggcctcaaagcccaaagtaaatgtacctatttttcattagaggtctt |
484 |
Q |
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| T |
37831 |
aatagtggcctcaaagcccaaagtaaatgtacctatttttcattagaggtctt |
37883 |
T |
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