View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_high_21 (Length: 250)
Name: NF16120_high_21
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 25816829 - 25816590
Alignment:
| Q |
11 |
caaaggtaaagtttccattccctacattaatatgtcatggagacacatcatcttatggtactaaacaaaacataagggttatataacacactaaaacaaa |
110 |
Q |
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| T |
25816829 |
caaaggtaaagtttccattccctacattaatatgtcaaggagacacatcatcttgtggtactaaacaaaacataagggttctataacacgctaaaacaaa |
25816730 |
T |
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| Q |
111 |
aagacaagacaaaagatagattctgttaagttacatgttgttcaagctcgagactttttcaccttattccctttactccctctactactgttatgtgcag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25816729 |
aagacaagacaaaagatagattctgttaagttacatgttgttcaagctcgagactttttcaccttattccctttactccctctactactgttatgtgtag |
25816630 |
T |
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| Q |
211 |
catacaatgtattctgtaaaccacttcctttaccatgttc |
250 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |
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| T |
25816629 |
catgcaatgtattctgtaaaccacttcctttaccatgttc |
25816590 |
T |
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