View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_high_3 (Length: 466)
Name: NF16120_high_3
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 38022459 - 38022881
Alignment:
| Q |
16 |
atcagaaagaggcggctcaaagtcgtgctacgacacaacaatggttgttgacaatgttcttgattgttcttcaccgacgagggctggtgtacctttaaat |
115 |
Q |
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| T |
38022459 |
atcagaaagaggcggctcaaagtcgtgctacgacacaacaatggttgttgacaatgttcttgattgttcttcaccgacgagggctggtgtacctttaaat |
38022558 |
T |
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| Q |
116 |
acactctaacacataaattagtaaggtctcaaggtgttttgaagaatatcttagaatgaaaattgtattcctgtatttaaggtgggggtgctctatttat |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
38022559 |
acactccaacacataaattagtaaggtctcaaggtgttttgaagaatatctaagaatgaaaattgtattcctgtatttaaggtaggggtgctatatttat |
38022658 |
T |
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| Q |
216 |
aatattccaataggtacaagaacatgcacatttgacgatcatacccttatggttcgaggaccaaccatctgttcaattgcttgaagagctcagattggca |
315 |
Q |
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| T |
38022659 |
agtattccaataagtacaagaacatgcacatttgacgatcatacccttatggttcgaggaccaaccatctgttcaattgcttgaagagctcagattggca |
38022758 |
T |
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| Q |
316 |
tcgagcatcttattcgatgctttgcggccttttgctggcagatgtagtctttaaatgtttcgggtgtcttacttggcctttgctttactaaaggattttg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38022759 |
tcgagcatcttattcgatgctttgcggccttttgctggcagatgtagtctttaaatgtttcgggtgtcttacttggcctttgctttactaaaggattttg |
38022858 |
T |
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| Q |
416 |
gactagagagttgagtctcttcc |
438 |
Q |
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| T |
38022859 |
gactagagagttgagtctcttcc |
38022881 |
T |
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