View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_high_4 (Length: 427)
Name: NF16120_high_4
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 188 - 421
Target Start/End: Complemental strand, 40760275 - 40760038
Alignment:
| Q |
188 |
ccacttaatgatgttaatacgtcactatgtttttaacttttaatctgttttcgtaattggttttgtaagaatttaatggtaggtaggatgtcattgtatt |
287 |
Q |
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| T |
40760275 |
ccacttaatgatgttaatacgtcactatgtttttaacttttaatctgttttcgtaattggttttgtaagaatttaatggtaggtaggatgtcattgtatt |
40760176 |
T |
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| Q |
288 |
tatgctattccaggtgactagaacaaaaggcattaagcatgcccttcgggg----atagcctgctgctatacttcatacatgatctgttttatttaggaa |
383 |
Q |
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| T |
40760175 |
tatgctattccaggtgactagaacaaaaggcattaagcatgcccttcggggatatatagcctgctgctatacttcatacatgatctgttttatttaggaa |
40760076 |
T |
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| Q |
384 |
acagttcttaatatggttatctaacaaaatgtcctaca |
421 |
Q |
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| T |
40760075 |
acagttcttaatatggttatctaacaaaatgtcctaca |
40760038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 40760453 - 40760347
Alignment:
| Q |
10 |
aagaatgtgactcggcagaagtactcaatattagagtagtgcacggttattcataatttcatataaatttgagaagaaaagaacaagtgggccaaaaatt |
109 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40760453 |
aagaatatgactcggcagaagtaatcaatattagagtagtggacggttattcataatttcatataaatttgagaagaaaagaacaagtgggccaaaaatt |
40760354 |
T |
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| Q |
110 |
cattaat |
116 |
Q |
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| T |
40760353 |
cattaat |
40760347 |
T |
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