View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_high_5 (Length: 421)
Name: NF16120_high_5
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 26513179 - 26513537
Alignment:
| Q |
20 |
acaagcagcatatgatctcattagtttgattcctagagatggattttgatgtgaattaagataaaaagtcatggtgtgaagctttttcaaggttttgata |
119 |
Q |
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| T |
26513179 |
acaagcagcatatgatctcattagtttgattcctagagatggattttgatgtgaattaagataaaaaatcatggtgtgaagctttttcaaagttttgata |
26513278 |
T |
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| Q |
120 |
tctgggttttggtctagtgcttttgctagaagttccaaagcttgtgaggatttgttgaatgaagaaagtaatgcttgtaattcagaaatgtgacgagata |
219 |
Q |
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| T |
26513279 |
tctgggttttggtctagtgcttttgctagaagt-ccaaagcttgtgaggatttgttgaatgaagaaagtaatgcttgtaattcagaaatgtgacgagata |
26513377 |
T |
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| Q |
220 |
gtttatgaaatggtagcattttacatatatctctgtcaatcgtgaataacaatattttcgtagtatatagtagagggaaatacaccatgcatatagttaa |
319 |
Q |
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| T |
26513378 |
gtttatgaaatggtagcattttacatatatctctgtcaatcatgaataacgatattttcgtagtatatagtagagggaaaaacaccatgcatatagttga |
26513477 |
T |
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| Q |
320 |
ata-tcaggtatgaagagaatataataaggtactgtaagtctttcgatccaatggtgaat |
378 |
Q |
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| T |
26513478 |
atattcaggtatgaagagaatataataaggtactgtaagactttcgatccaatggtgaat |
26513537 |
T |
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