View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16120_low_1 (Length: 594)

Name: NF16120_low_1
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16120_low_1
NF16120_low_1
[»] chr2 (20 HSPs)
chr2 (48-583)||(35341010-35341551)
chr2 (52-265)||(35355993-35356201)
chr2 (52-267)||(35374621-35374827)
chr2 (65-276)||(35335863-35336068)
chr2 (49-267)||(35351427-35351645)
chr2 (65-187)||(35346378-35346498)
chr2 (99-221)||(35343142-35343258)
chr2 (99-221)||(35368516-35368632)
chr2 (52-163)||(35364657-35364766)
chr2 (492-583)||(35346778-35346867)
chr2 (52-221)||(35347814-35347983)
chr2 (271-364)||(35372076-35372167)
chr2 (52-187)||(35371834-35371967)
chr2 (317-364)||(35346594-35346641)
chr2 (271-447)||(35351719-35351887)
chr2 (22-55)||(35348024-35348057)
chr2 (19-55)||(35340929-35340965)
chr2 (22-50)||(35355919-35355947)
chr2 (22-50)||(35371762-35371790)
chr2 (22-50)||(35374546-35374574)


Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 48 - 583
Target Start/End: Original strand, 35341010 - 35341551
Alignment:
Q  48 acaggaagtgtgtaatattgcttcaggtgtgtgcatcgctaattgcttgcttgtgtaat-----gggatcttgtgcagccacattggcaaaattgtcttt 142  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     ||||||||||||||||||||||||||||||||||||    
T  35341010 acaggaagtgtgtaatattgcttcaggtgtgtgcatcgctcattgcttgcttgtgtaatataatgggatcttgtgcagccacattggcaaaattgtcttt 35341109  T
Q  143 acaattcagcatacacgttggaagaagcagcatagattcaagaattaatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatata 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35341110 acaattcagcatacacgttggaagaagcagcatagattcaagaattaatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatata 35341209  T
Q  243 aagtgttgaatgtagaaagtggaacgacatgttgtcatttgatgatattctttggaagccataatgacgcggctacgagagtaataattttgcttggatc 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||    
T  35341210 aagtgttgaatgtagaaagtggaacgacatgttgtcatttgatgatattctttgcaagcc--aatgacgcggctacgagagtaataattttgcttggatc 35341307  T
Q  343 atattcaattttggggatattataaattcttataacactatacttt---tgggttaagggcgaaaaactctcaaacttttggttcaagagtgaaattcga 439  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |      || ||||||||||||||||||||||||||| ||||||||||||||| |    
T  35341308 atattgaattttggggatattataaattcttataacactatacactcaagaagtcaagggcgaaaaactctcaaacttttgggtcaagagtgaaattcaa 35341407  T
Q  440 aggattatccacatttgaaccaaaatattacatacatttggattatttgttggacactacaacttaactcaaaatctttagacattcaatttatgaattc 539  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  35341408 aggattatccacatttgaaccaaaatatttcatacatttggattctttgttagacactacaacttaactcaaaacctttagacattcaatttatgaattc 35341507  T
Q  540 ccttgattcagaggattatccacaacaataatgacgtgatgatg 583  Q
      |  |||||||||||||||||  ||||||||||||||||||||    
T  35341508 tttcaattcagaggattatccaacacaataatgacgtgatgatg 35341551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 52 - 265
Target Start/End: Original strand, 35355993 - 35356201
Alignment:
Q  52 gaagtgtgtaatattgcttcaggtgtgtgcatcgctaattgcttgcttgtgtaatgggatcttgtgcagccacattggcaaaattgtctttaca-attca 150  Q
    ||||||||||   |||||| ||||||| ||||  || | ||| ||| |||||||| | |||||||||||||||||||||||  ||||||||||| |||||    
T  35355993 gaagtgtgtatgtttgcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaa--ttgtctttacacattca 35356090  T
Q  151 gcatacacgttggaagaagcagcatagattcaagaattaatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatataaagtgttg 250  Q
    || ||||||||||||  ||||||  ||| ||||||||    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35356091 gcttacacgttggaaatagcagctaagaatcaagaat----attgacaaaatagaatgtttgagtggatgcttaatggatgtagaacatataaagtgttg 35356186  T
Q  251 aatgtagaaagtgga 265  Q
     ||||||||||||||    
T  35356187 gatgtagaaagtgga 35356201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 52 - 267
Target Start/End: Original strand, 35374621 - 35374827
Alignment:
Q  52 gaagtgtgtaatattgcttcaggtgtgtgcatcgctaattgcttgcttgtgtaatgggatcttgtgcagccacattggcaaaattgtctttacaattcag 151  Q
    ||||||||||   |||||| ||||||| ||||  || | ||| ||| |||||||| | |||||||||||||||||||||||  ||||||||||| |||||    
T  35374621 gaagtgtgtatgtttgcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaa--ttgtctttaca-ttcag 35374717  T
Q  152 catacacgttggaagaagcagcatagattcaagaattaatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatataaagtgttga 251  Q
    ||||||||||||||  ||||||  ||| ||||||||    ||||||||||||||||||||||||||||||  ||||||||  | |||||||||||||||     
T  35374718 catacacgttggaaatagcagctaagaatcaagaat----attgacaaaatagaatgtttgagtggatgcacaatggttg--ggacatataaagtgttgg 35374811  T
Q  252 atgtagaaagtggaac 267  Q
    ||||||| ||||||||    
T  35374812 atgtagatagtggaac 35374827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 65 - 276
Target Start/End: Original strand, 35335863 - 35336068
Alignment:
Q  65 ttgcttcaggtgtgtgcatcgctaattgcttgcttgtgtaatgggatcttgtgcagccacattggcaaaattgtctttacaattcagcatacacgttgga 164  Q
    |||||| ||||||| |||| |||   ||| ||| |||||||||| |||||||| ||||||||||||||  |||||||||||||||| | |||||||||||    
T  35335863 ttgcttaaggtgtgagcatggctcggtgcctgcatgtgtaatggcatcttgtgtagccacattggcaa--ttgtctttacaattcaacttacacgttgga 35335960  T
Q  165 agaagcagcatagattcaagaattaatattgacaaaatagaatgtttgagtggatgctta--atggttgtagaacatataaagtgttgaatgtagaaagt 262  Q
    | ||| |||| ||| ||||||||    |||||||||||| ||||||||||||||||| ||  |||||||  ||||||||||||||||  |||||||||||    
T  35335961 a-aagaagcaaagaatcaagaat----attgacaaaataaaatgtttgagtggatgcatataatggttgg-gaacatataaagtgtttgatgtagaaagt 35336054  T
Q  263 ggaacgacatgttg 276  Q
    ||||||||| ||||    
T  35336055 ggaacgacaagttg 35336068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 49 - 267
Target Start/End: Original strand, 35351427 - 35351645
Alignment:
Q  49 caggaagtgtgtaatattgcttcaggtgtgtgcatcgctaattgcttgcttgtgtaatgggatcttgtgcagccacattggcaaaattgtctttacaatt 148  Q
    |||||||||||||   |||||  ||||||| |||| ||||  |||| || |||||||||| |||||||||||||||||||||  |||||| |||| || |    
T  35351427 caggaagtgtgtatctttgctaaaggtgtgagcatggctacgtgctagcatgtgtaatggaatcttgtgcagccacattggc--aattgtttttataagt 35351524  T
Q  149 cagcatacacgttggaagaagcagcatagattcaagaat---taatattgacaaaatagaatgtttgagtggatgc--ttaatggttgtagaacatataa 243  Q
    |||||| ||||||||||||||||||  | ||| ||||||    |||||||| ||||| ||||||||||||||||||   |||| ||||  |||||| |||    
T  35351525 cagcatgcacgttggaagaagcagc--aaattaaagaatcaagaatattgaaaaaatcgaatgtttgagtggatgcatataatagttg-ggaacatttaa 35351621  T
Q  244 agtgttgaatgtagaaagtggaac 267  Q
    ||||||| | ||||||||||||||    
T  35351622 agtgttggaagtagaaagtggaac 35351645  T

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Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 35346378 - 35346498
Alignment:
Q  65 ttgcttcaggtgtgtgcatcgctaattgcttgcttgtgtaatgggatcttgtgcagccacattggcaaaattgtctttacaattcagcatacacgttgga 164  Q
    |||||| ||||||| |||| |||   ||| ||| |||| |||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  35346378 ttgcttaaggtgtgagcatggctcgatgcctgcatgtgcaatgggatcttgtgcagccacattggcaa--ttgtctttacaattcagcttacacgttgga 35346475  T
Q  165 agaagcagcatagattcaagaat 187  Q
    | | |||||||||| ||||||||    
T  35346476 aaatgcagcatagaatcaagaat 35346498  T

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Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 35343258 - 35343142
Alignment:
Q  99 tgtgtaatgggatcttgtgcagccacattggcaaaattgtctttacaattcagcatacacgttggaagaagcagcatagattcaagaattaatattgaca 198  Q
    |||||||||| || ||| ||||||||||||||||  |||||||||||||||||| || | |||||||  ||||||| ||| ||||||||    |||||||    
T  35343258 tgtgtaatggcatattgggcagccacattggcaa--ttgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaat----attgaca 35343165  T
Q  199 aaatagaatgtttgagtggatgc 221  Q
    |||||||||||||||||||||||    
T  35343164 aaatagaatgtttgagtggatgc 35343142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 35368516 - 35368632
Alignment:
Q  99 tgtgtaatgggatcttgtgcagccacattggcaaaattgtctttacaattcagcatacacgttggaagaagcagcatagattcaagaattaatattgaca 198  Q
    |||||||||| || ||| ||||||||||||||||  |||||||||||||||||| || | |||||||  ||||||| ||| ||||||||    |||||||    
T  35368516 tgtgtaatggcatattgggcagccacattggcaa--ttgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaat----attgaca 35368609  T
Q  199 aaatagaatgtttgagtggatgc 221  Q
    |||||||||||||||||||||||    
T  35368610 aaatagaatgtttgagtggatgc 35368632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 35364657 - 35364766
Alignment:
Q  52 gaagtgtgtaatattgcttcaggtgtgtgcatcgctaattgcttgcttgtgtaatgggatcttgtgcagccacattggcaaaattgtctttacaattcag 151  Q
    ||||||||||   |||||| ||||||| |||| |||  |||||||| ||||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  35364657 gaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttgcatgtgtaatgggatcttgtgcagccacattggc--atttgtctttacaattcag 35364754  T
Q  152 catacacgttgg 163  Q
    | |||| |||||    
T  35364755 cgtacatgttgg 35364766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 492 - 583
Target Start/End: Original strand, 35346778 - 35346867
Alignment:
Q  492 gacactacaacttaactcaaaatctttagacattcaatttatgaattcccttgattcagaggattatccacaacaataatgacgtgatgatg 583  Q
    |||| |||||||||||| ||  ||||||||||||| | |||||||||||||  |||||||||||||||| ||||||||||||||||| ||||    
T  35346778 gacaatacaacttaacttaa--tctttagacattcgacttatgaattccctcaattcagaggattatccgcaacaataatgacgtgacgatg 35346867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 221
Target Start/End: Complemental strand, 35347983 - 35347814
Alignment:
Q  52 gaagtgtgtaatattgcttcaggtgtgtgcatcgctaattgcttgcttgtgtaat--gggatcttgtgcagccacattggcaaaattgtctttacaattc 149  Q
    |||||||||||  |||||| |||| || |||| ||||  ||| ||| ||||||||  ||| ||||||||||||||||||||  |||||||| ||||||||    
T  35347983 gaagtgtgtaagtttgcttaaggtatgagcatggctacgtgcctgcatgtgtaatatggggtcttgtgcagccacattggc--aattgtctctacaattc 35347886  T
Q  150 agc----atacacgt-tggaagaagcagcatagattcaagaattaatattgacaaaatagaatgtttgagtggatgc 221  Q
    |||    |||||||| ||||| ||| |||| ||| |||||    |||||||||||||||||||||||||||||||||    
T  35347885 agcatatatacacgtatggaa-aagaagcaaagactcaag----aatattgacaaaatagaatgtttgagtggatgc 35347814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 271 - 364
Target Start/End: Original strand, 35372076 - 35372167
Alignment:
Q  271 atgttgtcatttgatgatattctttggaagccataatgacgcggctacgagagtaataattttgcttggatcatattcaa-ttttggggatatta 364  Q
    ||||||||||||||||| |||||||||||||||  || |||||||  ||||||||||||||||||||||||||| || || |||| |||||||||    
T  35372076 atgttgtcatttgatga-attctttggaagcca--atcacgcggcggcgagagtaataattttgcttggatcatgttgaactttttgggatatta 35372167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 52 - 187
Target Start/End: Original strand, 35371834 - 35371967
Alignment:
Q  52 gaagtgtgtaatattgcttcaggtgtgtgcatcgctaattgcttgcttgtgtaatgggatcttgtgcagccacattggcaaaattgtctttacaattcag 151  Q
    ||||||||||   |||||| ||||||| |||| |||  |||||| | |||||||||||||||||||||||  |||||||  | || ||||||||||||||    
T  35371834 gaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttccatgtgtaatgggatcttgtgcagcatcattggc--atttctctttacaattcag 35371931  T
Q  152 catacacgttggaagaagcagcatagattcaagaat 187  Q
    | |||||||||  | ||||| || ||| ||||||||    
T  35371932 cttacacgttgataaaagcaacaaagaatcaagaat 35371967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 364
Target Start/End: Original strand, 35346594 - 35346641
Alignment:
Q  317 acgagagtaataattttgcttggatcatattcaattttggggatatta 364  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||    
T  35346594 acgagagtaataattttgcttggatcatatttaattttggtgatatta 35346641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 447
Target Start/End: Original strand, 35351719 - 35351887
Alignment:
Q  271 atgttgtcatttgatgatattctttggaagccataatgacgcggctacgagagtaataattttgcttggatcata-ttcaattttggggatattataaat 369  Q
    |||||||||||| ||||||||||||||||||||     ||   || ||||||||||||||||||||||||||||| || | |||||  |||||||||  |    
T  35351719 atgttgtcatttcatgatattctttggaagcca-----accatgc-acgagagtaataattttgcttggatcatattttatttttgtagatattatatct 35351812  T
Q  370 tcttataacactatacttttgggttaagggcgaaaaactctcaaacttttggttcaagagtgaaattcgaaggattat 447  Q
    | ||| |||||||||| | |   | |||||  |||||||||||||||| ||| ||||||||| | |||| ||||||||    
T  35351813 ttttaaaacactatacatat---tcaagggacaaaaactctcaaacttctgggtcaagagtggagttcggaggattat 35351887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 35348057 - 35348024
Alignment:
Q  22 attggagagtttgtgtgttatatataacaggaag 55  Q
    ||||||||||||||||||||||||||||| ||||    
T  35348057 attggagagtttgtgtgttatatataacaagaag 35348024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 35340929 - 35340965
Alignment:
Q  19 agtattggagagtttgtgtgttatatataacaggaag 55  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  35340929 agtattggagagtttgtgtgatatatataacaagaag 35340965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 35355919 - 35355947
Alignment:
Q  22 attggagagtttgtgtgttatatataaca 50  Q
    |||||||||||||||||||||||||||||    
T  35355919 attggagagtttgtgtgttatatataaca 35355947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 35371762 - 35371790
Alignment:
Q  22 attggagagtttgtgtgttatatataaca 50  Q
    |||||||||||||||||||||||||||||    
T  35371762 attggagagtttgtgtgttatatataaca 35371790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 35374546 - 35374574
Alignment:
Q  22 attggagagtttgtgtgttatatataaca 50  Q
    |||||||||||||||||||||||||||||    
T  35374546 attggagagtttgtgtgttatatataaca 35374574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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