View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16120_low_12 (Length: 348)
Name: NF16120_low_12
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 12617776 - 12618087
Alignment:
| Q |
19 |
gaatatggtagcgcgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtcta |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12617776 |
gaatatggtagcacgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtcta |
12617875 |
T |
|
| Q |
119 |
atactctcatcgtcttgaaactcgtttagacaaacagaacaatctgttacatcaaccaatccatcattctttttgtatttgcaaactgttatggacttga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12617876 |
atactctcatcgtcttgaaactcgtttagacaaacagaacaatctgttacatcaaccaatccatcattctttttgtatttgcaaactgttatggacttga |
12617975 |
T |
|
| Q |
219 |
tcaaagtttcatctaatccatttgttgaaacatgccatggttcatggatcgaagggttatgatgatgatgatggtcgtcttcaaattcatcgtttgcttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12617976 |
tcaaagtttcatctaatccatttgttgaaacatgccatggttcatggatcgaagggttatgatgatgatgatggtcgtcttcaaattcatcgtttgcttc |
12618075 |
T |
|
| Q |
319 |
acgcgattcact |
330 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12618076 |
acgcgattcact |
12618087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 27268501 - 27268431
Alignment:
| Q |
32 |
cgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctaca |
102 |
Q |
| |
|
||||| ||||| ||||||| ||||||| | | ||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
27268501 |
cgacatagagggcaattagtatgagatctcaaccaagtatcaatacaagaaatgtgaaaagcatggctaca |
27268431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 165
Target Start/End: Original strand, 27771592 - 27771725
Alignment:
| Q |
32 |
cgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgt |
131 |
Q |
| |
|
||||| ||||||||| |||| | |||||| |||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||| | |
|
|
| T |
27771592 |
cgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcat |
27771691 |
T |
|
| Q |
132 |
cttgaaactcgtttagacaaacagaacaatctgt |
165 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |
|
|
| T |
27771692 |
cttgaaactcacttagacaaactgaacaatctgt |
27771725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 37504079 - 37504191
Alignment:
| Q |
62 |
agccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaat |
161 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| |||||||| ||||| |||| ||| | |||||| || |||||||| || ||||||||||||||| | |
|
|
| T |
37504079 |
agccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaacact |
37504178 |
T |
|
| Q |
162 |
ctgttacatcaac |
174 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
37504179 |
ctgtcccatcaac |
37504191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 37227863 - 37227974
Alignment:
| Q |
62 |
agccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaat |
161 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||| |||| || || |||||||||| | ||||||| |||| |||||| | | |||||||||||||| |
|
|
| T |
37227863 |
agccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctcatcttcttcaaactcactcaaacaaacagaacaat |
37227962 |
T |
|
| Q |
162 |
ctgttacatcaa |
173 |
Q |
| |
|
||| | |||||| |
|
|
| T |
37227963 |
ctgatccatcaa |
37227974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 1867110 - 1867031
Alignment:
| Q |
62 |
agccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactc |
141 |
Q |
| |
|
||||| |||||||||||| | | |||||||||||| ||| |||||||||||||||| | ||||||| |||| |||||| |
|
|
| T |
1867110 |
agccaagtatcaatacaaagtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactc |
1867031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University