View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16120_low_13 (Length: 338)

Name: NF16120_low_13
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16120_low_13
NF16120_low_13
[»] chr8 (2 HSPs)
chr8 (184-286)||(29262621-29262720)
chr8 (100-150)||(29262510-29262560)
[»] chr6 (2 HSPs)
chr6 (178-272)||(27613189-27613279)
chr6 (78-143)||(27613062-27613127)
[»] chr3 (1 HSPs)
chr3 (190-252)||(3062010-3062072)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 29262621 - 29262720
Alignment:
Q  184 agcataaaaacgtaactcatattaaacaagtagttttgttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaagttacatttta 283  Q
    |||||||||||||||||||||| ||||   ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29262621 agcataaaaacgtaactcatatgaaac---tagtttatttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaagttacatttta 29262717  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 29262510 - 29262560
Alignment:
Q  100 taaaggtcatcagaactttccctttcttttttaaaaaaggtcaagtatttt 150  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  29262510 taaaggtcatcaaaactttccctttcttttctaataaaggtcaagtatttt 29262560  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 27613189 - 27613279
Alignment:
Q  178 ctctcgagcataaaaacgtaactcatattaaacaagtagttttgttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaa 272  Q
    ||||||||||||||||||||||||||  |||| |||||  |||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||    
T  27613189 ctctcgagcataaaaacgtaactcat--taaataagtaaatttgttcctttcctgtc--gagctcatggaacttgggaagaaaatagttgatcaa 27613279  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 27613062 - 27613127
Alignment:
Q  78 ttaaattaaccatgctacaatataaaggtcatcagaactttccctttcttttttaaaaaaggtcaa 143  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||    
T  27613062 ttaaattaaccatgctacaatataaaggtaatcagaactttacttttctttttcaaaaaaggtcaa 27613127  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 3062010 - 3062072
Alignment:
Q  190 aaaacgtaactcatattaaacaagtagttttgttcctttcctctctcgagttcatggaacttg 252  Q
    |||| |||| ||||||||||||||| |||||||||||||||||| ||| ||||| ||||||||    
T  3062010 aaaatgtaattcatattaaacaagtcgttttgttcctttcctctttcgggttcaaggaacttg 3062072  T

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