View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16120_low_18 (Length: 304)

Name: NF16120_low_18
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16120_low_18
NF16120_low_18
[»] chr7 (15 HSPs)
chr7 (1-217)||(4817788-4818004)
chr7 (1-176)||(4785359-4785534)
chr7 (227-304)||(40521204-40521281)
chr7 (225-304)||(7298632-7298711)
chr7 (228-300)||(28948998-28949069)
chr7 (129-217)||(4698845-4698933)
chr7 (225-304)||(19804794-19804873)
chr7 (228-299)||(40521016-40521086)
chr7 (228-294)||(7298835-7298900)
chr7 (226-300)||(16979610-16979683)
chr7 (231-300)||(46567960-46568028)
chr7 (228-294)||(19805612-19805678)
chr7 (259-304)||(46568146-46568191)
chr7 (124-209)||(4862270-4862355)
chr7 (234-283)||(47478367-47478415)
[»] chr2 (21 HSPs)
chr2 (228-304)||(16115232-16115308)
chr2 (226-304)||(42028576-42028654)
chr2 (228-304)||(15332850-15332926)
chr2 (227-304)||(16115045-16115122)
chr2 (227-304)||(31470586-31470662)
chr2 (227-304)||(42028766-42028843)
chr2 (228-304)||(2059490-2059566)
chr2 (228-304)||(13280023-13280099)
chr2 (228-300)||(31860079-31860151)
chr2 (228-304)||(31860273-31860349)
chr2 (229-300)||(3671822-3671892)
chr2 (228-294)||(7317833-7317899)
chr2 (228-294)||(36059285-36059351)
chr2 (228-304)||(2059672-2059748)
chr2 (228-304)||(7317635-7317711)
chr2 (228-300)||(31470770-31470841)
chr2 (228-304)||(38086155-38086231)
chr2 (227-289)||(13279839-13279901)
chr2 (228-294)||(38085967-38086032)
chr2 (228-285)||(15330449-15330505)
chr2 (228-304)||(3672011-3672087)
[»] chr8 (12 HSPs)
chr8 (226-304)||(2814432-2814510)
chr8 (225-300)||(14193517-14193591)
chr8 (228-304)||(397193-397269)
chr8 (228-304)||(37994896-37994972)
chr8 (228-304)||(41539770-41539846)
chr8 (225-304)||(37994705-37994784)
chr8 (228-294)||(41539969-41540034)
chr8 (228-304)||(14193324-14193399)
chr8 (228-294)||(2814243-2814308)
chr8 (228-304)||(44036814-44036890)
chr8 (225-294)||(397004-397072)
chr8 (244-294)||(25101746-25101796)
[»] scaffold0214 (2 HSPs)
scaffold0214 (225-304)||(11815-11894)
scaffold0214 (227-304)||(11625-11702)
[»] chr3 (13 HSPs)
chr3 (225-304)||(36635426-36635505)
chr3 (227-304)||(27073096-27073173)
chr3 (228-304)||(33214443-33214519)
chr3 (227-304)||(33219071-33219148)
chr3 (228-304)||(19580498-19580574)
chr3 (228-304)||(33214627-33214703)
chr3 (230-304)||(10598810-10598884)
chr3 (235-304)||(36274126-36274195)
chr3 (228-289)||(27072913-27072974)
chr3 (228-304)||(36274313-36274389)
chr3 (231-294)||(36635241-36635303)
chr3 (225-304)||(11650997-11651076)
chr3 (228-290)||(10599000-10599062)
[»] chr1 (25 HSPs)
chr1 (225-304)||(50892960-50893039)
chr1 (228-300)||(10227904-10227976)
chr1 (228-304)||(28217707-28217783)
chr1 (226-304)||(10227710-10227788)
chr1 (227-304)||(48871425-48871502)
chr1 (232-304)||(19059378-19059450)
chr1 (228-300)||(23346419-23346491)
chr1 (227-304)||(26552180-26552257)
chr1 (228-300)||(7062189-7062260)
chr1 (228-300)||(48752586-48752657)
chr1 (228-300)||(48871247-48871318)
chr1 (228-300)||(50893155-50893226)
chr1 (228-300)||(28217530-28217601)
chr1 (227-299)||(42180570-42180641)
chr1 (229-304)||(39669246-39669321)
chr1 (229-300)||(50905104-50905175)
chr1 (227-300)||(4156891-4156963)
chr1 (259-304)||(7062038-7062083)
chr1 (226-299)||(41834069-41834141)
chr1 (236-304)||(19059566-19059634)
chr1 (237-293)||(23346620-23346675)
chr1 (230-304)||(26551992-26552066)
chr1 (226-300)||(41833872-41833946)
chr1 (229-304)||(50904992-50905069)
chr1 (259-300)||(42180764-42180805)
[»] chr5 (30 HSPs)
chr5 (226-304)||(33377836-33377914)
chr5 (228-304)||(791592-791668)
chr5 (228-304)||(26534686-26534762)
chr5 (228-304)||(42630711-42630787)
chr5 (231-304)||(35454638-35454710)
chr5 (228-304)||(5146691-5146767)
chr5 (228-304)||(26534506-26534582)
chr5 (226-289)||(6518201-6518264)
chr5 (225-304)||(19898942-19899021)
chr5 (230-304)||(8323896-8323970)
chr5 (227-304)||(8323706-8323783)
chr5 (227-300)||(14388512-14388584)
chr5 (227-300)||(35454450-35454522)
chr5 (228-304)||(130254-130330)
chr5 (228-304)||(8489123-8489199)
chr5 (228-304)||(13823336-13823412)
chr5 (231-299)||(19897228-19897295)
chr5 (228-294)||(5146504-5146569)
chr5 (228-294)||(14069861-14069926)
chr5 (227-304)||(40881791-40881866)
chr5 (227-304)||(130436-130513)
chr5 (228-304)||(228717-228793)
chr5 (227-285)||(791810-791868)
chr5 (231-304)||(42630895-42630968)
chr5 (228-300)||(6518395-6518466)
chr5 (231-289)||(228987-229044)
chr5 (245-304)||(40882007-40882066)
chr5 (228-294)||(13823150-13823215)
chr5 (259-304)||(27319655-27319700)
chr5 (231-291)||(27319482-27319541)
[»] chr4 (14 HSPs)
chr4 (227-304)||(3102728-3102805)
chr4 (228-304)||(40533963-40534039)
chr4 (228-304)||(40534151-40534227)
chr4 (228-304)||(3102540-3102616)
chr4 (228-304)||(18381497-18381573)
chr4 (228-299)||(5121000-5121071)
chr4 (225-304)||(9231577-9231656)
chr4 (229-304)||(13690216-13690291)
chr4 (228-294)||(11147014-11147080)
chr4 (228-304)||(18936865-18936941)
chr4 (228-304)||(37177814-37177890)
chr4 (228-300)||(18936676-18936747)
chr4 (247-290)||(9231782-9231825)
chr4 (228-293)||(37177624-37177688)
[»] chr6 (8 HSPs)
chr6 (228-304)||(33022164-33022240)
chr6 (229-304)||(7789858-7789933)
chr6 (228-304)||(21389021-21389097)
chr6 (229-304)||(33022356-33022431)
chr6 (231-300)||(21389214-21389282)
chr6 (239-304)||(7789678-7789742)
chr6 (229-294)||(28472559-28472624)
chr6 (229-294)||(29859748-29859813)
[»] scaffold0140 (1 HSPs)
scaffold0140 (228-294)||(15847-15913)
[»] scaffold0135 (2 HSPs)
scaffold0135 (225-304)||(37443-37522)
scaffold0135 (247-290)||(37648-37691)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4817788 - 4818004
Alignment:
Q  1 aattggcacattttactgatgatgggagtgatacgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaaccactactgaagaaca 100  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4817788 aattgtcacattttactgatgatgggagtgatatgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaacctctactgaagaaca 4817887  T
Q  101 acctttgttttcataaaattttcatgctacggtgttttctgagattgaaaatccaaaagcacgatagatatttgccactatttctaaaatttccgaatgt 200  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4817888 acctttgttttctgaaaattttcatgctacggtgttttctgagattggaaatccaaaagcacgatagatatttgccactatttctaaaattttcgaatgt 4817987  T
Q  201 atattttattacaaaat 217  Q
    |||||||||||||||||    
T  4817988 atattttattacaaaat 4818004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 4785359 - 4785534
Alignment:
Q  1 aattggcacattttactgatgatgggagtgatacgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaaccactactgaagaaca 100  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4785359 aattgtcacattttactgatgatgggagtgatatgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaacctctactgaagaaca 4785458  T
Q  101 acctttgttttcataaaattttcatgctacggtgttttctgagattgaaaatccaaaagcacgatagatatttgcc 176  Q
    ||||||||||||  |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  4785459 acctttgttttctgaaaattttcatgctacggtgttttctgagaatggaaatccaaaagcacgatagatatttgcc 4785534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 40521281 - 40521204
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  40521281 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgttt 40521204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 7298632 - 7298711
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  7298632 tatgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttt 7298711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 28949069 - 28948998
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtcatt 28948998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 4698845 - 4698933
Alignment:
Q  129 acggtgttttctgagattgaaaatccaaaagcacgatagatatttgccactatttctaaaatttccgaatgtatattttattacaaaat 217  Q
    |||||||||||||||||||  ||||||| ||||||||||||| ||  ||||  ||||||||||||| |||||||||||||||| |||||    
T  4698845 acggtgttttctgagattgggaatccaagagcacgatagataattctcactcattctaaaatttccaaatgtatattttattaaaaaat 4698933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 19804794 - 19804873
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||||| ||||| ||||| || ||||||    
T  19804794 tatgagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgttt 19804873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 40521016 - 40521086
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcat 299  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||    
T  40521016 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgacacgtcat 40521086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 7298900 - 7298835
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  7298900 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacataacac 7298835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 16979683 - 16979610
Alignment:
Q  226 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||||| ||||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||| |||||    
T  16979683 atgagaaattcttgtgtaggaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtcatt 16979610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 46567960 - 46568028
Alignment:
Q  231 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    ||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| |||||    
T  46567960 aaattcttgtgtaggaacgaacttaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 46568028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 19805678 - 19805612
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||||  |||||||||| |||| ||| ||||||||||||||||||||    
T  19805678 gagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacac 19805612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 46568191 - 46568146
Alignment:
Q  259 tatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  46568191 tatcattcttacaaacaacaaattaaaacatgacacatcattgttt 46568146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 4862355 - 4862270
Alignment:
Q  124 atgctacggtgttttctgagattgaaaatccaaaagcacgatagatatttgccactatttctaaaatttccgaatgtatattttat 209  Q
    |||||||||||||||||||||| |  ||||||| |||| |||||||| ||| ||||  | |||||||||   ||||||| ||||||    
T  4862355 atgctacggtgttttctgagatcgggaatccaagagcaagatagatagttgtcactcatcctaaaattttgaaatgtatgttttat 4862270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 47478367 - 47478415
Alignment:
Q  234 tttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaatta 283  Q
    ||||||||||| |||||||  ||| |||||||||||||||||||||||||    
T  47478367 tttttgtgtagaaacgaacttaac-tatcattcttacaaacaacaaatta 47478415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 16115308 - 16115232
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgttt 16115232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 42028576 - 42028654
Alignment:
Q  226 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||    
T  42028576 atgagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgttt 42028654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 15332926 - 15332850
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||||    
T  15332926 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgttt 15332850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 16115045 - 16115122
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||| || ||||||    
T  16115045 tgagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttt 16115122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 31470586 - 31470662
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  31470586 tgagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgttt 31470662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 42028843 - 42028766
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || || ||||||    
T  42028843 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttt 42028766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 2059490 - 2059566
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||| ||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgttt 2059566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 13280099 - 13280023
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || || ||||||    
T  13280099 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttt 13280023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 31860079 - 31860151
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||| ||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| |||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtcatt 31860151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 31860349 - 31860273
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| || ||||||    
T  31860349 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgttt 31860273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 3671822 - 3671892
Alignment:
Q  229 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  3671822 agaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacatcatt 3671892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 7317899 - 7317833
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  7317899 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacac 7317833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 36059351 - 36059285
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||    
T  36059351 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac 36059285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 2059748 - 2059672
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||| || ||||||    
T  2059748 gagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttt 2059672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 7317635 - 7317711
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||| ||||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||| || ||||||    
T  7317635 gagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgttt 7317711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 31470841 - 31470770
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  ||||||| |||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaataatgacacatcatt 31470770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 38086231 - 38086155
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||||||||||| || |||| ||| |||||||||||||||||||||||||||| |||| || |||||||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgttt 38086155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 13279839 - 13279901
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacat 289  Q
    ||||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||    
T  13279839 tgagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 38085967 - 38086032
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacac 38086032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaa 285  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 3672087 - 3672011
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| || || ||||||||| | ||  ||||||| ||||||| |||||||||||| || |||| |||||||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgttt 3672011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 2814510 - 2814432
Alignment:
Q  226 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  2814510 atgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttt 2814432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 14193591 - 14193517
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  14193591 tatgagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 14193517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 397269 - 397193
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| |||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||    
T  397269 gagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgttt 397193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 37994972 - 37994896
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| || ||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgttt 37994896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 41539770 - 41539846
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| || ||||||    
T  41539770 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgttt 41539846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 37994705 - 37994784
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| || || ||||||    
T  37994705 tatgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgttt 37994784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 41540034 - 41539969
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  41540034 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacac 41539969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 14193324 - 14193399
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||||| |||||||||||| ||| ||| ||| |||||||||||||||||||||||||||| |||||||||    
T  14193324 gagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgttt 14193399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 2814243 - 2814308
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||    
T  2814243 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacac 2814308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 44036814 - 44036890
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||  |||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||| || ||||||    
T  44036814 gagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgttt 44036890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 397004 - 397072
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    ||||||||||| ||||| ||||||||||| ||| |||||||||||||||||| |||||||||||| ||||    
T  397004 tatgagaaattcttgtgcaggaacgaacctaac-tatcattcttacaaacaataaattaaaacataacac 397072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 25101746 - 25101796
Alignment:
Q  244 ggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||||| |||||||||||||| ||||||||||| ||||| |||||||    
T  25101746 ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacac 25101796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 11894 - 11815
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  11894 tatgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttt 11815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 11625 - 11702
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||| |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  11625 tgagtaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgttt 11702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 36635505 - 36635426
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  36635505 tatgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttt 36635426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 27073173 - 27073096
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  27073173 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttt 27073096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 33214443 - 33214519
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  33214443 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttt 33214519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 33219071 - 33219148
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  | |||||||||    
T  33219071 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgttt 33219148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 19580574 - 19580498
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||  |||||||||    
T  19580574 gagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgttt 19580498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 33214703 - 33214627
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||| || ||||||    
T  33214703 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgttt 33214627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 10598810 - 10598884
Alignment:
Q  230 gaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||| ||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||| || ||||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgttt 10598884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 36274126 - 36274195
Alignment:
Q  235 ttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| || ||||||    
T  36274126 ttttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttt 36274195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 27072913 - 27072974
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacat 289  Q
    |||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||    
T  27072913 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 36274389 - 36274313
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| || |||||||||||| | ||||||||||  |||||||||||||||||||||||||||| || ||||||    
T  36274389 gagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgttt 36274313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 36635241 - 36635303
Alignment:
Q  231 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    ||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaac-tatcattgttacaaacaacaaattaaaacatgacac 36635303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 11650997 - 11651076
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||| |||| || ||||||||| ||| ||||||||||||||||||||| |||||| |||| |  |||||||||    
T  11650997 tatgagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgttt 11651076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatg 290  Q
    |||||||| |||||| | |||||||| ||| |||||| |||||||||||||||||||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 50892960 - 50893039
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  50892960 tatgagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttt 50893039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 10227976 - 10227904
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||    
T  10227976 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacatcatt 10227904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 28217783 - 28217707
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||||||    
T  28217783 gagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgttt 28217707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 10227710 - 10227788
Alignment:
Q  226 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| || ||||||    
T  10227710 atgagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttt 10227788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 48871502 - 48871425
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||  ||| |||||||||    
T  48871502 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgttt 48871425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 19059378 - 19059450
Alignment:
Q  232 aatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttt 19059450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 23346419 - 23346491
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||    
T  23346419 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcatt 23346491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 26552257 - 26552180
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||| |||||||||| |||||| |||||||||| ||||||||||||||||||||| ||||||| || ||||||    
T  26552257 tgagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttt 26552180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 7062260 - 7062189
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||| |||||    
T  7062260 gagaaatttttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtcatt 7062189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 48752657 - 48752586
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||| ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 48752586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 48871247 - 48871318
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaataacaaattaaaacatgacacatcatt 48871318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 50893226 - 50893155
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaac-tatcattattacaaacaacaaattaaaacatgacacatcatt 50893155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 28217530 - 28217601
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    ||||||||  |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| |||||    
T  28217530 gagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 28217601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 42180570 - 42180641
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcat 299  Q
    ||||||||| ||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||| ||||    
T  42180570 tgagaaattcttgtgtaggaacgaacctaac-tagcattattacaaacaacaaattaaaacatgacacgtcat 42180641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 39669321 - 39669246
Alignment:
Q  229 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||| |||||||| |||||||  ||| ||||||||||||||| |||||||||||||||||||| | |||||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgttt 39669246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 50905175 - 50905104
Alignment:
Q  229 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||||||||||  |||||| | ||| ||||||||||||||||||||||||||||||||| || |||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtcatt 50905104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 4156891 - 4156963
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    ||||||||| ||||||||||| ||||| ||| ||||||||||||||| || ||||||||||||||||| |||||    
T  4156891 tgagaaattcttgtgtaggaaggaacctaac-tatcattcttacaaataataaattaaaacatgacacgtcatt 4156963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 7062038 - 7062083
Alignment:
Q  259 tatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  7062038 tatcattcttacaaacaacaaattaaaacatgacacgtcattgttt 7062083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 41834141 - 41834069
Alignment:
Q  226 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcat 299  Q
    |||||||||| ||||||||||||||||  ||| || |||| |||||||||||||||||||||||||||| ||||    
T  41834141 atgagaaattcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgacacgtcat 41834069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 19059634 - 19059566
Alignment:
Q  236 tttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||||||||||| |||||||||| |||| ||| |||||||||||| ||||||| || ||||||    
T  19059634 tttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgttt 19059566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 23346675 - 23346620
Alignment:
Q  237 ttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgaca 293  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||    
T  23346675 ttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgaca 23346620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 26551992 - 26552066
Alignment:
Q  230 gaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||| ||||||||||||||| | |||||||||| ||||||||||| ||||||||| ||| ||| || ||||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgttt 26552066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 41833872 - 41833946
Alignment:
Q  226 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||||| |||| ||| |||||| | ||  ||||||||||||| |||||||||||||||||||||| |||||    
T  41833872 atgagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcatt 41833946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 50904992 - 50905069
Alignment:
Q  229 agaaatttttgtgtaggaacgaaccca--acctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||| ||||||||||||||||| |  |  ||||||| ||||||||||||| |||||||||||||| |||||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgttt 50905069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 42180805 - 42180764
Alignment:
Q  259 tatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  42180805 tatcattcttacaaacaacaaactaaaacatgacacatcatt 42180764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 33377914 - 33377836
Alignment:
Q  226 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  33377914 atgagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttt 33377836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 791592 - 791668
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| || ||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttt 791668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 26534762 - 26534686
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  26534762 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttt 26534686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 42630711 - 42630787
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||| ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgttt 42630787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 35454710 - 35454638
Alignment:
Q  231 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  35454710 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgttt 35454638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 5146767 - 5146691
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| |||||||| |||||||| ||  |||||||||||||||||||||||||||||||||||| |||||||||    
T  5146767 gagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgttt 5146691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 26534506 - 26534582
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||| || ||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgttt 26534582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 6518201 - 6518264
Alignment:
Q  226 atgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacat 289  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  6518201 atgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 6518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 19899021 - 19898942
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||| ||||||||||||||||| ||| ||||||| ||| |||||||||||||||||||||||  |||||||||    
T  19899021 tatgagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgttt 19898942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 8323970 - 8323896
Alignment:
Q  230 gaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| || ||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttt 8323896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 8323706 - 8323783
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||| ||||||||||||||||| ||||||||||  |||||||||| ||||||||||||||||| || ||||||    
T  8323706 tgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgttt 8323783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 14388584 - 14388512
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    ||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  14388584 tgagaaattcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 14388512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 35454450 - 35454522
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    ||||||||| ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  35454450 tgagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 35454522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 130254 - 130330
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| ||||| |||  ||||||||||||||||||||||||||||| || ||||||    
T  130254 gagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgttt 130330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 8489123 - 8489199
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| |||||||||||| || | ||| |||||||||||||||||||||||||||| ||||||| |||||||||    
T  8489123 gagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgttt 8489199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 13823412 - 13823336
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||  ||| ||||||| ||||||| |||||||||||||||||||| |||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgttt 13823336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 19897228 - 19897295
Alignment:
Q  231 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcat 299  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  19897228 aaattattgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcat 19897295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 5146504 - 5146569
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacac 5146569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 14069861 - 14069926
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  14069861 gagaaattcttgtgtaggaacgaacctaac-tatcattcttataaacaacaaattaaaacatgacac 14069926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 40881791 - 40881866
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||| ||||||||||||||||| |||  || |||||||||||||| ||||||||||||||||| |||||||||    
T  40881791 tgagaaattgttgtgtaggaacgaacctaac--attattcttacaaacaataaattaaaacatgacacgtcattgttt 40881866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 130513 - 130436
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||| || ||||| |||||||| |||||||||| |||||||||||||||||||||||| |||| || ||||||    
T  130513 tgagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgttt 130436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 228717 - 228793
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||  |||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||| | |||||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgttt 228793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 791868 - 791810
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaa 285  Q
    ||||||||| ||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  791868 tgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 42630968 - 42630895
Alignment:
Q  231 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||| ||||||||| ||||||| |||||||||| ||||||||||| ||||||||| ||||||| || ||||||    
T  42630968 aaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgttt 42630895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 6518466 - 6518395
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||| |||| || |||||    
T  6518466 gagaaattcttgtgtagtaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgatacatcatt 6518395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 229044 - 228987
Alignment:
Q  231 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacat 289  Q
    |||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||    
T  229044 aaatttttgtgtagaaacgaacataac-tatcattcttacaaacaacaaattaaaacat 228987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 40882066 - 40882007
Alignment:
Q  245 gaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||| | ||| |||||||||||||||||||||||||||| ||||||| | |||||||    
T  40882066 gaacgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgttattgttt 40882007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 13823150 - 13823215
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||||| || ||||||||| || |||||| ||| |||||||||||||    
T  13823150 gagaaattcttgtgtaggaacgaacctaa-ctatcattcgtataaacaataaactaaaacatgacac 13823215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 27319700 - 27319655
Alignment:
Q  259 tatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||||||||||||||||||||||| |||| || |||||||||    
T  27319700 tatcattcttacaaacaacaaattaaaatatgaaacatcattgttt 27319655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 27319482 - 27319541
Alignment:
Q  231 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatga 291  Q
    |||||||||||||| || ||||  ||| ||||||||||||||| || ||||||||||||||    
T  27319482 aaatttttgtgtagtaatgaacttaac-tatcattcttacaaataataaattaaaacatga 27319541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 3102805 - 3102728
Alignment:
Q  227 tgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  3102805 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttt 3102728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 40533963 - 40534039
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || ||||||    
T  40533963 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgttt 40534039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 40534227 - 40534151
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttt 40534151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 3102540 - 3102616
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || || ||||||    
T  3102540 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttt 3102616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 18381573 - 18381497
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||||| |||||||||    
T  18381573 gagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgttt 18381497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 5121071 - 5121000
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcat 299  Q
    |||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  5121071 gagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcat 5121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 9231577 - 9231656
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||| ||||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||| || ||||||    
T  9231577 tatgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttt 9231656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 13690216 - 13690291
Alignment:
Q  229 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || || ||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttt 13690291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 11147014 - 11147080
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  11147014 gagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacac 11147080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 18936941 - 18936865
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| |||| |||||||||||| ||  |||||||||||||||||| ||||||||||||||||| |||||||||    
T  18936941 gagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgttt 18936865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 37177890 - 37177814
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| |||| |||||||||||  ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  37177890 gagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttt 37177814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 18936676 - 18936747
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    |||||||| ||||||| ||||||||  ||| ||||||||||||||||||||||||||||||||| || |||||    
T  18936676 gagaaattcttgtgtatgaacgaacataac-tatcattcttacaaacaacaaattaaaacatgatacgtcatt 18936747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 9231825 - 9231782
Alignment:
Q  247 acgaacccaacctatcattcttacaaacaacaaattaaaacatg 290  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 9231782  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 37177624 - 37177688
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgaca 293  Q
    |||||||| || ||||||||||||  |||  |||||||||||||||||| ||||||||| ||||||    
T  37177624 gagaaattcttctgtaggaacgaattcaat-tatcattcttacaaacaataaattaaaatatgaca 37177688  T

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Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 33022164 - 33022240
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  33022164 gagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttt 33022240  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 7789933 - 7789858
Alignment:
Q  229 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttt 7789858  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 21389021 - 21389097
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    |||||||| || |||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttt 21389097  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 33022431 - 33022356
Alignment:
Q  229 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| || ||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttt 33022356  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 21389282 - 21389214
Alignment:
Q  231 aaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcatt 300  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  21389282 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 21389214  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 7789678 - 7789742
Alignment:
Q  239 gtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||  |||||||||    
T  7789678 gtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattgttt 7789742  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 28472624 - 28472559
Alignment:
Q  229 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||||| |||||||||||||| ||  ||||||| ||| ||||||||||||||| ||| ||||    
T  28472624 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacac 28472559  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 29859813 - 29859748
Alignment:
Q  229 agaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||||| |||||||||||||| ||  ||||||| ||| ||||||||||||||| ||| ||||    
T  29859813 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacac 29859748  T

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Target: scaffold0140 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 15847 - 15913
Alignment:
Q  228 gagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacac 294  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  15847 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 15913  T

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Target: scaffold0135 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 37443 - 37522
Alignment:
Q  225 tatgagaaatttttgtgtaggaacgaacccaacctatcattcttacaaacaacaaattaaaacatgacacttcattgttt 304  Q
    ||||||||||| ||||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||| || ||||||    
T  37443 tatgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttt 37522  T

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Target: scaffold0135; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 37691 - 37648
Alignment:
Q  247 acgaacccaacctatcattcttacaaacaacaaattaaaacatg 290  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 37648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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