View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_low_19 (Length: 301)
Name: NF16120_low_19
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 5744523 - 5744687
Alignment:
| Q |
19 |
ggcagaaccgttgctgattttttgggtacctaatttctgttattagctttagagtataaattaagtaatgtgataattttttatgagaaaatcaaccata |
118 |
Q |
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| T |
5744523 |
ggcagaaccgttgccgattttttgggtacctaatttctgttattagctttagagtataaattaagtaatgtgataattttt--tgggtacctaa---ttt |
5744617 |
T |
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| Q |
119 |
gttaaggcttaaa-ttttttatttgtagtattctaaagtgaatt--tctcaatttgagaagcgaaatcaa |
185 |
Q |
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| T |
5744618 |
cctaaggcttaaatttttttatttgtagtattctaaagtgaatttatctcaatttgagaagcgaaatcaa |
5744687 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 46185257 - 46185320
Alignment:
| Q |
238 |
tgtacgtaatcataattcttagtggaattaatttctttcttctttatattcttttgttcctttt |
301 |
Q |
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| T |
46185257 |
tgtacgtaatcataattgttagtggaattaagttatgtcatctttatattcttttgttactttt |
46185320 |
T |
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