View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_low_22 (Length: 285)
Name: NF16120_low_22
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_low_22 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 133 - 285
Target Start/End: Complemental strand, 36155158 - 36155006
Alignment:
| Q |
133 |
aagccaacataaaatacagaatcaatcacacaaaacaacaaaaaatcactgaatccttccatcaaataaaccttatagaacaactccaccaaccaaaccc |
232 |
Q |
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| T |
36155158 |
aagccaacataaaatacagaatcaatcacacagaacaacaaaaaatcactgaatccttccatcaaataaaccttatagaacagctccaccaaccaaaccc |
36155059 |
T |
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| Q |
233 |
attccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaac |
285 |
Q |
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| T |
36155058 |
attccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaac |
36155006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 36151703 - 36151621
Alignment:
| Q |
202 |
accttatagaacaactccaccaaccaaacccattccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaa |
284 |
Q |
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| T |
36151703 |
accttatagaacaactccaccaaccaaacccattccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaa |
36151621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 36155293 - 36155197
Alignment:
| Q |
20 |
agggaccaataacatatttaacccaaaaattaattactgaccaaaaagcccctcatgtataattggattctcataatccatgaacgaaacacaaatta |
117 |
Q |
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| T |
36155293 |
agggaccaatagcatatttaacccaaaaattaattaatgatcaaaa-gcccctcatgtataattgaattctcataatccatgaacgaaacacaaatta |
36155197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 25369580 - 25369552
Alignment:
| Q |
20 |
agggaccaataacatatttaacccaaaaa |
48 |
Q |
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| T |
25369580 |
agggaccaataacatatttaacccaaaaa |
25369552 |
T |
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