View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_low_24 (Length: 261)
Name: NF16120_low_24
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 48277254 - 48277494
Alignment:
| Q |
9 |
taactttaaatatcaatacatgagaaggaaatcttggttcataatgatatttttagtttgaacatgtaatcaaaagtagcattaggaattaggattaact |
108 |
Q |
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| T |
48277254 |
taactttaaatatcaatacatgagaaggaaatcttggttcataatgatatttttagtttgaacatgtaatcaaaaatagcattaggaattaggattaact |
48277353 |
T |
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| Q |
109 |
gtctttttcttgaaattaggtgagcttgaatggagcacaggtcacgtcatggcgtaatgagcagggggaagaacttctattcacaagtagcaaggtatgt |
208 |
Q |
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| T |
48277354 |
gtctttttcttgaaattaggtgagcttgaatggagcacaggtcacgtcatggcgtaatgagcagggggaagaacttctattcacaagtagcaaggtatgt |
48277453 |
T |
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| Q |
209 |
cttttagttttcattacaaagtatatgtattttagatgatg |
249 |
Q |
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| T |
48277454 |
cttttagttttcattacaaagtatatgtattttagatgatg |
48277494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 36807168 - 36807304
Alignment:
| Q |
113 |
ttttcttgaaattaggtgagcttgaatggagcacaggtcacgtcatggcgtaatgagcagggggaagaacttctattcacaagtagcaaggtatgtcttt |
212 |
Q |
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| T |
36807168 |
ttttcttgcaattaggtaagcttacatggagcgcaggtcacttcatggcgtaatgagcagggggaagaactgctattcacaagctgcaaggtgtgtcttt |
36807267 |
T |
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| Q |
213 |
tagttttcattacaaagtatatgta-ttttagatgat |
248 |
Q |
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| T |
36807268 |
gaattttgattaaaaagtatttttagttttagatgat |
36807304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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