View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16120_low_25 (Length: 258)

Name: NF16120_low_25
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16120_low_25
NF16120_low_25
[»] chr4 (16 HSPs)
chr4 (19-142)||(55694213-55694337)
chr4 (140-233)||(3102537-3102630)
chr4 (144-233)||(13690216-13690305)
chr4 (140-233)||(40533960-40534053)
chr4 (143-221)||(3102726-3102804)
chr4 (143-233)||(9231580-9231670)
chr4 (142-220)||(18936864-18936942)
chr4 (143-220)||(40534150-40534227)
chr4 (142-209)||(11147013-11147080)
chr4 (140-220)||(18381496-18381576)
chr4 (141-214)||(5121000-5121073)
chr4 (140-220)||(37177813-37177893)
chr4 (141-220)||(18936674-18936752)
chr4 (140-208)||(37177621-37177688)
chr4 (162-205)||(9231782-9231825)
chr4 (141-221)||(11147211-11147290)
[»] chr5 (26 HSPs)
chr5 (143-233)||(42630711-42630801)
chr5 (143-233)||(8323707-8323797)
chr5 (142-233)||(130253-130344)
chr5 (143-233)||(26534506-26534596)
chr5 (140-220)||(26534685-26534765)
chr5 (141-220)||(5146690-5146769)
chr5 (139-220)||(35454637-35454717)
chr5 (145-220)||(8323895-8323970)
chr5 (141-220)||(42630894-42630973)
chr5 (143-220)||(791592-791669)
chr5 (143-220)||(33377835-33377912)
chr5 (141-209)||(13823148-13823215)
chr5 (143-222)||(5146504-5146582)
chr5 (143-222)||(35454451-35454529)
chr5 (143-233)||(791768-791867)
chr5 (143-220)||(130435-130512)
chr5 (139-220)||(8489119-8489200)
chr5 (141-209)||(14069859-14069926)
chr5 (143-215)||(14388512-14388583)
chr5 (137-220)||(6518390-6518472)
chr5 (143-220)||(40881792-40881867)
chr5 (143-220)||(228717-228794)
chr5 (143-204)||(6518203-6518264)
chr5 (143-220)||(13823335-13823412)
chr5 (143-220)||(19898941-19899018)
chr5 (146-214)||(19897228-19897295)
[»] chr1 (24 HSPs)
chr1 (140-233)||(10227886-10227979)
chr1 (147-225)||(19059378-19059456)
chr1 (138-220)||(10227707-10227789)
chr1 (142-220)||(23346418-23346496)
chr1 (145-233)||(26551992-26552080)
chr1 (143-220)||(26552179-26552256)
chr1 (141-221)||(28217528-28217607)
chr1 (141-220)||(28217706-28217785)
chr1 (143-222)||(50893148-50893226)
chr1 (143-221)||(4156892-4156969)
chr1 (143-221)||(48871247-48871324)
chr1 (136-221)||(7062183-7062267)
chr1 (143-220)||(48871424-48871501)
chr1 (143-215)||(48752586-48752657)
chr1 (152-221)||(23346607-23346675)
chr1 (143-220)||(50892963-50893040)
chr1 (143-214)||(42180571-42180641)
chr1 (144-220)||(50904992-50905070)
chr1 (143-220)||(41833874-41833951)
chr1 (152-220)||(19059565-19059633)
chr1 (144-220)||(39669245-39669321)
chr1 (143-214)||(41834069-41834139)
chr1 (174-220)||(7062038-7062084)
chr1 (174-220)||(42180759-42180805)
[»] scaffold0214 (2 HSPs)
scaffold0214 (143-233)||(11801-11891)
scaffold0214 (147-220)||(11630-11703)
[»] chr2 (22 HSPs)
chr2 (143-233)||(16115218-16115308)
chr2 (143-233)||(31860079-31860169)
chr2 (143-233)||(42028752-42028842)
chr2 (143-224)||(2059490-2059571)
chr2 (140-233)||(7317632-7317725)
chr2 (141-209)||(7317833-7317901)
chr2 (141-220)||(15332849-15332928)
chr2 (136-209)||(36059285-36059358)
chr2 (140-220)||(13280022-13280102)
chr2 (140-220)||(31860272-31860352)
chr2 (136-220)||(42028571-42028655)
chr2 (143-204)||(13279840-13279901)
chr2 (144-222)||(3671822-3671899)
chr2 (143-220)||(31470587-31470663)
chr2 (142-220)||(2059671-2059749)
chr2 (143-220)||(16115046-16115123)
chr2 (143-209)||(38085967-38086032)
chr2 (143-200)||(15330449-15330505)
chr2 (137-222)||(31470763-31470847)
chr2 (143-220)||(38086154-38086231)
chr2 (143-220)||(3672010-3672087)
chr2 (142-171)||(36059247-36059276)
[»] chr8 (11 HSPs)
chr8 (143-233)||(37994708-37994798)
chr8 (143-220)||(37994895-37994972)
chr8 (140-233)||(44036811-44036904)
chr8 (143-221)||(2814430-2814508)
chr8 (137-209)||(41539969-41540040)
chr8 (143-220)||(14193512-14193588)
chr8 (141-220)||(397192-397271)
chr8 (142-220)||(41539769-41539847)
chr8 (141-209)||(2814241-2814308)
chr8 (143-209)||(397007-397072)
chr8 (141-220)||(14193322-14193400)
[»] chr3 (13 HSPs)
chr3 (143-233)||(33219072-33219162)
chr3 (142-233)||(33214613-33214704)
chr3 (140-233)||(10598805-10598898)
chr3 (142-220)||(33214442-33214520)
chr3 (143-220)||(27073095-27073172)
chr3 (140-233)||(36274299-36274392)
chr3 (142-204)||(27072912-27072974)
chr3 (143-220)||(36635425-36635502)
chr3 (140-220)||(19580497-19580577)
chr3 (143-220)||(36274120-36274196)
chr3 (146-209)||(36635241-36635303)
chr3 (143-205)||(10599000-10599062)
chr3 (143-220)||(11651000-11651077)
[»] chr6 (6 HSPs)
chr6 (142-233)||(33022163-33022254)
chr6 (144-220)||(33022355-33022431)
chr6 (139-221)||(21389208-21389289)
chr6 (144-221)||(7789856-7789933)
chr6 (143-220)||(21389021-21389098)
chr6 (154-221)||(7789678-7789744)
[»] scaffold0135 (2 HSPs)
scaffold0135 (143-233)||(37446-37536)
scaffold0135 (162-205)||(37648-37691)
[»] chr7 (10 HSPs)
chr7 (143-233)||(19804797-19804887)
chr7 (143-220)||(40521203-40521280)
chr7 (143-222)||(28948991-28949069)
chr7 (143-220)||(7298635-7298712)
chr7 (138-209)||(7298835-7298905)
chr7 (139-209)||(19805612-19805682)
chr7 (141-214)||(40521014-40521086)
chr7 (143-221)||(16979604-16979681)
chr7 (146-215)||(46567960-46568028)
chr7 (174-220)||(46568145-46568191)
[»] scaffold0140 (1 HSPs)
scaffold0140 (137-209)||(15841-15913)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 55694337 - 55694213
Alignment:
Q  19 acctcatgtcactgacagaaattaaagagatcaatgtacccagaataatattagaaggatcaccataacaggttgt-aaatgatttttattttaattact 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  55694337 acctcatgtcactgacagaaattaaagagatcaatgtacccaaaataatattacaaggatcaacataacaggttgtaaaatgatttttattttaattact 55694238  T
Q  118 ttggtttacactttttcttaaaaaa 142  Q
    |||||||||||||||||||||||||    
T  55694237 ttggtttacactttttcttaaaaaa 55694213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 3102537 - 3102630
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || ||||||||||||||||||||    
T  3102537 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaatg 3102630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 13690216 - 13690305
Alignment:
Q  144 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || ||||||||||||||||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaatg 13690305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 40533960 - 40534053
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||| || || ||||||||||||||| ||||    
T  40533960 aaagagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccatgaatg 40534053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 3102804 - 3102726
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||||||    
T  3102804 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttt 3102726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 9231580 - 9231670
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  9231580 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 9231670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 18936942 - 18936864
Alignment:
Q  142 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  18936942 agagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 18936864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 40534227 - 40534150
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 40534150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 11147013 - 11147080
Alignment:
Q  142 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||    
T  11147013 agagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacac 11147080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 18381576 - 18381496
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||||||||||  | |||| ||||||| ||| ||| ||||||||||||| ||||||||||    
T  18381576 aaagagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgtttt 18381496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 5121073 - 5121000
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 214  Q
    ||||||||||||||||||||||| |||||||  |||||| ||||||||||| ||| ||||||||||||| ||||    
T  5121073 aagagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcat 5121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 37177893 - 37177813
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||| ||||||||||| |||  |||||| ||||||||||| ||| |||||||||| || ||||||||||    
T  37177893 aaagagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 37177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 18936674 - 18936752
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||| |||||||| ||| ||||||| ||||||||||| ||| |||||||||| || ||||| ||||    
T  18936674 aagagaaattcttgtgtatgaacgaacataa-ctatcattcttacaaacaacaaattaaaacatgatacgtcattttttt 18936752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 37177621 - 37177688
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgaca 208  Q
    |||||||||||||| ||||||||||||   ||| |||||| ||||||||||||||| ||||| ||||||    
T  37177621 aaagagaaattcttctgtaggaacgaattcaat-tatcattcttacaaacaataaattaaaatatgaca 37177688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 9231825 - 9231782
Alignment:
Q  162 acgaacctaatctatcatccttacaaacaataaactaaaacatg 205  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||    
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 9231782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 11147290 - 11147211
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    |||| |||||||| ||||| |||||| |||| |||| || ||||||||||||||| ||||| ||||||  ||||| |||||    
T  11147290 aagaaaaattcttatgtagaaacgaatctaa-ctattattcttacaaacaataaattaaaatatgacatgtcatttttttt 11147211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 42630711 - 42630801
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttttccaccataaatg 42630801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 8323707 - 8323797
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || ||||||||||||||| ||||    
T  8323707 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttttccaccatgaatg 8323797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 130253 - 130344
Alignment:
Q  142 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||| ||| ||||||||||||| || ||||||||||||||||||||    
T  130253 agagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccataaatg 130344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 26534506 - 26534596
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 26534596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 26534765 - 26534685
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  26534765 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 5146769 - 5146690
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  5146769 aagagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 5146690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 35454717 - 35454637
Alignment:
Q  139 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  35454717 aaaagaaaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 35454637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 8323970 - 8323895
Alignment:
Q  145 gaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||| || |||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 8323895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 42630973 - 42630894
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||| || |||||||    
T  42630973 aagaaaaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgtttt 42630894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 791592 - 791669
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| || |||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 791669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 33377912 - 33377835
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||| |||||||||||||||||  |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  33377912 gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 33377835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 13823148 - 13823215
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    ||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||    
T  13823148 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcgtataaacaataaactaaaacatgacac 13823215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 5146504 - 5146582
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 222  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| | ||| ||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacatgacacgttattttttttc 5146582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 35454451 - 35454529
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 222  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| ||||||    
T  35454451 gagaaattcttgtgtatgaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcattttttttc 35454529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 791867 - 791768
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaa-----taaac----taaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||     |||||    ||||||||||||| ||||| |||||||||||||||||    
T  791867 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaacaaattaaaacatgacacgtcattatttttccaccataaatg 791768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 130512 - 130435
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||| |||||||| |||| || |||||||    
T  130512 gagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgtttt 130435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 8489119 - 8489200
Alignment:
Q  139 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||| || ||||  |||||| ||||||||||| ||| ||||| ||||||| ||||||||||    
T  8489119 aaaagagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgtttt 8489200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 14069859 - 14069926
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||| |||||||||||||    
T  14069859 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttataaacaacaaattaaaacatgacac 14069926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 14388583 - 14388512
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcatt 215  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||    
T  14388583 gagaaattcttgtgtaggaacaaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatt 14388512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 6518472 - 6518390
Alignment:
Q  137 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||| ||||| |||| || ||||| ||||    
T  6518472 aaaaaagagaaattcttgtgtagtaacgaacctaa-ctatcattcttacaaacaacaaattaaaatatgatacatcattttttt 6518390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 40881792 - 40881867
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||| ||||||||||||||||||||   || || ||||||||||||||| ||||||||||||| ||||||||||    
T  40881792 gagaaattgttgtgtaggaacgaacctaac--attattcttacaaacaataaattaaaacatgacacgtcattgtttt 40881867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 228717 - 228794
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||  |||||||||||||||||||  |||||| |||| |||||||||| ||||||||||||| | ||||||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgtttt 228794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 6518203 - 6518264
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacat 204  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||    
T  6518203 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 6518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 13823412 - 13823335
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||| |||  ||||||  ||||||| || ||| ||||||||||||| ||||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgtttt 13823335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 19899018 - 19898941
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||||  ||||||  ||| |||||| ||| ||||||||||||  ||||||||||    
T  19899018 gagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgtttt 19898941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 19897228 - 19897295
Alignment:
Q  146 aaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 214  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||    
T  19897228 aaattattgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcat 19897295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 10227979 - 10227886
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||    
T  10227979 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacatcattatttttccaccataaatg 10227886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 19059378 - 19059456
Alignment:
Q  147 aattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccac 225  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||||||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccac 19059456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 10227707 - 10227789
Alignment:
Q  138 aaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| || |||||||    
T  10227707 aaaatgagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 10227789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 23346418 - 23346496
Alignment:
Q  142 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| ||||| ||||    
T  23346418 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattttttt 23346496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 26551992 - 26552080
Alignment:
Q  145 gaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||| ||| ||| || ||||||||||||||| ||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttttccaccatgaatg 26552080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 26552256 - 26552179
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||| ||||||| || |||||||    
T  26552256 gagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 26552179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 28217528 - 28217607
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||| ||||| |||||    
T  28217528 aagagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 28217607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 28217785 - 28217706
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||| ||||||||||||||||||||  |||||| ||||||||||| |||  |||||||||||| ||||||||||    
T  28217785 aagagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgtttt 28217706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 50893226 - 50893148
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 222  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| ||| ||||||||||||| ||||| ||||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaa-ctatcattattacaaacaacaaattaaaacatgacacatcattttttttc 50893148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 4156892 - 4156969
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||| |||||| ||||||||||||| ||||| |||||    
T  4156892 gagaaattcttgtgtaggaaggaacctaa-ctatcattcttacaaataataaattaaaacatgacacgtcatttttttt 4156969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 48871247 - 48871324
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| || ||| ||||||||||||| ||||| |||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaataacaaattaaaacatgacacatcatttttttt 48871324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 7062267 - 7062183
Alignment:
Q  136 taaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    ||||||||||||||| |||||||||||||||||||| |||||||  |||||||||| ||| ||||| ||||||| ||||| |||||    
T  7062267 taaaaaagagaaatttttgtgtaggaacgaacctaa-ctatcatttttacaaacaacaaattaaaatatgacacgtcatttttttt 7062183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 48871501 - 48871424
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||  ||| ||||||||||    
T  48871501 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgtttt 48871424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 48752657 - 48752586
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcatt 215  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatt 48752586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 23346675 - 23346607
Alignment:
Q  152 ttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||  ||||| |||||    
T  23346675 ttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacatgacatgtcatttttttt 23346607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 50892963 - 50893040
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||| |||||||| ||||||| |||  |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  50892963 gagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 50893040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 42180571 - 42180641
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 214  Q
    ||||||||||||||||||||||||||||| ||| |||  |||||||||| ||| ||||||||||||| ||||    
T  42180571 gagaaattcttgtgtaggaacgaacctaa-ctagcattattacaaacaacaaattaaaacatgacacgtcat 42180641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 50904992 - 50905070
Alignment:
Q  144 agaaattcttgtgtaggaacgaaccta--atctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||  || ||||||  |||||||||| ||  ||||||||||||| ||||||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgtttt 50905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 41833874 - 41833951
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||| ||| |||||| ||||| |||||| |||||| |||| ||| ||||||||||||| ||||| ||||    
T  41833874 gagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattatttt 41833951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 19059633 - 19059565
Alignment:
Q  152 ttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||| |||||||||||| ||| || ||| ||||| ||||||| || |||||||    
T  19059633 ttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgtttt 19059565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 39669321 - 39669245
Alignment:
Q  144 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||| ||||||| |||  |||||| |||||||| || ||| ||||||||||||| | ||||||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgtttt 39669245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 41834139 - 41834069
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 214  Q
    ||||||||||||||||||||||||| ||| ||| |||  |||||||||| ||| ||||||||||||| ||||    
T  41834139 gagaaattcttgtgtaggaacgaacataa-ctagcattattacaaacaacaaattaaaacatgacacgtcat 41834069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 7062038 - 7062084
Alignment:
Q  174 tatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  7062038 tatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 7062084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 42180805 - 42180759
Alignment:
Q  174 tatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||| ||||||||||| ||||||||||||||||| ||||| ||||    
T  42180805 tatcattcttacaaacaacaaactaaaacatgacacatcattatttt 42180759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 11891 - 11801
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||    
T  11891 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccataaatg 11801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 11630 - 11703
Alignment:
Q  147 aattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| ||||||||||    
T  11630 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgtttt 11703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 16115308 - 16115218
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttttccaccataaatg 16115218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 31860079 - 31860169
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| ||||| |||||||||||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtcattatttttccaccataaatg 31860169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 42028842 - 42028752
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || ||||||||||||||||||||    
T  42028842 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaatg 42028752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 2059490 - 2059571
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttcca 224  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttttcca 2059571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 7317632 - 7317725
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||    
T  7317632 aaagagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttttccaccataaatg 7317725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 7317901 - 7317833
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  7317901 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacac 7317833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 15332928 - 15332849
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  15332928 aagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 15332849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 36059358 - 36059285
Alignment:
Q  136 taaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||||    
T  36059358 taaaaaagagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacac 36059285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 13280102 - 13280022
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || || |||||||    
T  13280102 aaagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 13280022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 31860352 - 31860272
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| || |||||||    
T  31860352 aaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgtttt 31860272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 42028571 - 42028655
Alignment:
Q  136 taaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| || |||||||    
T  42028571 taaaaatgagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgtttt 42028655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 13279840 - 13279901
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  13279840 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 3671822 - 3671899
Alignment:
Q  144 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 222  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| ||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacatcattttttttc 3671899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 31470587 - 31470663
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| ||| ||||||||||||| ||||||||||    
T  31470587 gagaaattcttgtgtaggaacgaacctaa-ctatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 31470663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 2059749 - 2059671
Alignment:
Q  142 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||| ||||| ||||||| || |||||||    
T  2059749 agagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 2059671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 16115046 - 16115123
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||| ||| ||||| ||||||| || |||||||    
T  16115046 gagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 16115123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 38085967 - 38086032
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||||||| ||| |||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaa-ctatcattcttacaaacaacaaattaaaacatgacac 38086032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaa 200  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 31470847 - 31470763
Alignment:
Q  137 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 222  Q
    ||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||| ||| ||||  ||||||| ||||| ||||||    
T  31470847 aaaaaggagaaatttttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaataatgacacatcattttttttc 31470763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 38086231 - 38086154
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||| ||||||||| || |||||||  |||||| ||||||||||| ||| ||||| |||| || ||||||||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgtttt 38086154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 3672087 - 3672010
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||| || ||||||||| ||||| ||||||  ||||||| || ||| ||||| || |||| ||||||||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgtttt 3672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 36059247 - 36059276
Alignment:
Q  142 agagaaattcttgtgtaggaacgaacctaa 171  Q
    ||||||||||||||||||||||||||||||    
T  36059247 agagaaattcttgtgtaggaacgaacctaa 36059276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 37994708 - 37994798
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || || ||||||||||||||| ||||    
T  37994708 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttttccaccatgaatg 37994798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 37994972 - 37994895
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgtttt 37994895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 44036811 - 44036904
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||| | ||||||||||| || ||||||||||||||| ||||    
T  44036811 aaagagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttttccaccatgaatg 44036904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 2814508 - 2814430
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||||||| |||||||||||    
T  2814508 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 2814430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 41540040 - 41539969
Alignment:
Q  137 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||||    
T  41540040 aaaaaagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacac 41539969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 14193588 - 14193512
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| ||||    
T  14193588 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcattttttt 14193512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 397271 - 397192
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||| |||||||||||  |||||| |||| |||||| ||| ||||||||||||| ||||||||||    
T  397271 aagagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgtttt 397192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 41539769 - 41539847
Alignment:
Q  142 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||| ||||||| || |||||||    
T  41539769 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgtttt 41539847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 2814241 - 2814308
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||| ||||||||    
T  2814241 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaatcatgacac 2814308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 397007 - 397072
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||| ||||    
T  397007 gagaaattcttgtgcaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacataacac 397072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 14193322 - 14193400
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||| |||| |||||||||||||||  ||| ||  |||||||||| ||| ||||||||||||| ||||||||||    
T  14193322 aagagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgtttt 14193400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 33219072 - 33219162
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||  | |||||||||||||||||||||||    
T  33219072 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttttccaccataaatg 33219162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 33214704 - 33214613
Alignment:
Q  142 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  33214704 agagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 33214613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 10598805 - 10598898
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  10598805 aaagggaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 10598898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 33214442 - 33214520
Alignment:
Q  142 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  33214442 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 27073172 - 27073095
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || |||||||    
T  27073172 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 27073095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 36274392 - 36274299
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    |||||||||||||| |||||||||||| |||| |||||||| |||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  36274392 aaagagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 36274299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 27072912 - 27072974
Alignment:
Q  142 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  27072912 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 36635502 - 36635425
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||||  ||||||  |||||||||| ||| ||||||||||||| ||||||||||    
T  36635502 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 36635425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 19580577 - 19580497
Alignment:
Q  140 aaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||| |||||||||||||||  |||||| ||||||||||| ||| ||||||||||||  ||||||||||    
T  19580577 aaagagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgtttt 19580497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 36274120 - 36274196
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||| || |||||||    
T  36274120 gagaaatt-ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 36635241 - 36635303
Alignment:
Q  146 aaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    |||||||||||||||||||||||||| |||||||  |||||||||| ||| |||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaa-ctatcattgttacaaacaacaaattaaaacatgacac 36635303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatg 205  Q
    ||||||||||||||| | |||||||||||  |||||||||||||||||| ||| |||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 11651000 - 11651077
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||| || ||||||||||||  |||||| ||||||||||| ||  ||||| |||| |  ||||||||||    
T  11651000 gagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgtttt 11651077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 33022163 - 33022254
Alignment:
Q  142 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  33022163 agagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 33022254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 33022431 - 33022355
Alignment:
Q  144 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||| || |||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 21389289 - 21389208
Alignment:
Q  139 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||| |||||    
T  21389289 aaaagataaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 21389208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 7789933 - 7789856
Alignment:
Q  144 agaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    ||||||||||||||||||| ||||||||  |||||| ||||||||||| ||| ||||||||||||| |||||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 7789856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 21389021 - 21389098
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    ||||||||||| |||||||||||||||||  |||||| ||||||||||| ||| |||||||||| || ||||||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 21389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 7789678 - 7789744
Alignment:
Q  154 gtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    |||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||  |||||||||||    
T  7789678 gtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacatgtcattgttttt 7789744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 37446 - 37536
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||||||| ||| ||||||||||||| || ||||||||||||||| ||||    
T  37446 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaatg 37536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 37691 - 37648
Alignment:
Q  162 acgaacctaatctatcatccttacaaacaataaactaaaacatg 205  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||    
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 37648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 19804797 - 19804887
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttccaccataaatg 233  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||| ||| | ||||| ||||| || ||||||||||||||| ||||    
T  19804797 gagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttttccaccatgaatg 19804887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 40521280 - 40521203
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  40521280 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgtttt 40521203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 28949069 - 28948991
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttttc 222  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||| ||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacatgacacgtcattttttttc 28948991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 7298635 - 7298712
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||||||||||||||||||||||||||  ||||||  |||||||||| ||| ||||||||||||| ||||||||||    
T  7298635 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 7298712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 7298905 - 7298835
Alignment:
Q  138 aaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||| ||||    
T  7298905 aaaaagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacataacac 7298835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 19805682 - 19805612
Alignment:
Q  139 aaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| ||| || ||| |||||||||||||    
T  19805682 aaaagagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacac 19805612  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 40521014 - 40521086
Alignment:
Q  141 aagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcat 214  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||| ||||||| ||||    
T  40521014 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaatatgacacgtcat 40521086  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 16979681 - 16979604
Alignment:
Q  143 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcattgttttt 221  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||| || ||| ||||||||||||| ||||| |||||    
T  16979681 gagaaattcttgtgtaggaacgaatctaa-ctatcattcttacaaataacaaattaaaacatgacacgtcatttttttt 16979604  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 46567960 - 46568028
Alignment:
Q  146 aaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacacttcatt 215  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||| ||| ||||||||||||| |||||    
T  46567960 aaattcttgtgtaggaacgaacttaa-ctatcattcttacaaacaacaaattaaaacatgacacgtcatt 46568028  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 46568191 - 46568145
Alignment:
Q  174 tatcatccttacaaacaataaactaaaacatgacacttcattgtttt 220  Q
    |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  46568191 tatcattcttacaaacaacaaattaaaacatgacacatcattgtttt 46568145  T

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Target: scaffold0140 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 15841 - 15913
Alignment:
Q  137 aaaaaagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaataaactaaaacatgacac 209  Q
    |||| ||||||||||||||||||||||||||||||  |||||| ||||||||||| ||| |||||||||||||    
T  15841 aaaatagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 15913  T

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