View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_low_3 (Length: 498)
Name: NF16120_low_3
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_low_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 12 - 498
Target Start/End: Original strand, 4163979 - 4164469
Alignment:
| Q |
12 |
atgaactgtaccaatgtgtggactctctgtgatgatcattgctcccatgaccaagcataagggttcaaactgtgacagtaatttgctgtgcgcaactaga |
111 |
Q |
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| T |
4163979 |
atgaactgtaccaatgtgtggactttctgtgatgatcattgctcccatgaccaagcataagggttcaaactgtgacagtaatttgttgtgcgcaactaga |
4164078 |
T |
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| Q |
112 |
ggctaactttacaccttaccttctctttttctggatacttgttagttccttccggaccgtttttgaaacttcaaagatgcagatatttgtttggatcttc |
211 |
Q |
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| T |
4164079 |
ggctaactttacaccttaccttctctttttctggatacttgttagttccttccggaccgtttttgaaacttcaaagatgcaaatatttgtttggatcttc |
4164178 |
T |
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| Q |
212 |
ttggttcagacctgatgggtaaaggcaaacacaggtaattaaaaatcctctgttttgatcaaatccatttacgtgatggttatttttattttctataaac |
311 |
Q |
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| T |
4164179 |
ttggttcatacctgatgggtaaaggcaaacacaggtaattaaaaatcctctgttttgatcaaatccatttacgtgatggttatttttattttctataaac |
4164278 |
T |
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| Q |
312 |
tttgctgctccgtcagtttcagtaatttggccaaat---aagtata-ccaccttcttttcatagtgcaaaattaacattttagttgggattcttaatttt |
407 |
Q |
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| T |
4164279 |
tttgctgctccgtcagtttcagtaatttggccaaatctcaagtatacccaccttcttttcatagtgcaaaattaccattttagttgggattcttaatttt |
4164378 |
T |
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| Q |
408 |
ctgattgctatttatatggcctgactcatattttctctattactgttttgtttaatggtgaattcgcattatactttaacaaggttctgat |
498 |
Q |
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| T |
4164379 |
ctgattgctatttatatggcctgactcatattttctctattactgttttgtttaatggtgaattcgcactatactttaacaaggttctgat |
4164469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 30 - 498
Target Start/End: Original strand, 4177234 - 4177704
Alignment:
| Q |
30 |
tggactctctgtgatgatcattgctcccatgaccaagcataagggttcaaactgtgacagta-atttgctgtgcgcaactagaggctaactttacacctt |
128 |
Q |
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| T |
4177234 |
tggactttctatgatgatcattgcttccatgaccaaggataaagattcaaactgtgacaatagatttgctgtgtgcaattgaaggctaaatttacaccta |
4177333 |
T |
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| Q |
129 |
accttctctttttctggatacttgttagttccttccggaccgtttttgaaacttcaaagatgcagatatttgtt-----tggatctt-cttggttcagac |
222 |
Q |
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| T |
4177334 |
accttctctgtttgtggacacttcttggttcatgcctgaccttttttgaaactttaacgacgcagatatttgttgcaaaaagattttccatggttctggc |
4177433 |
T |
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| Q |
223 |
ctgatgggtaaaggcaa--acacaggtaattaaaaatcctctgttttgatcaaatccatttacgtgatggttatttttattttctataaactttgctgct |
320 |
Q |
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| T |
4177434 |
ctgatggat-aaggcaaacacacaggtaattaaaaatcctctgttttgatcaaaccca-ttaaatgatggttattttaatttttcattttc-tagaaacc |
4177530 |
T |
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| Q |
321 |
ccgtcagtttcagtaatttggccaaa---taagtataccaccttcttttcatagtgcaaaattaacattttagttgggattcttaattttctgattgcta |
417 |
Q |
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| T |
4177531 |
ttgtcagttccagtattttggccaaattttaagtataccacattcttttcatagcgcaaaattaacatttaagttggcattcttatttttc--------- |
4177621 |
T |
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| Q |
418 |
tttatatggcctgactc-----atattttctctattactgttttgtttaatggtgaattcgcattatactttaacaaggttctgat |
498 |
Q |
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| T |
4177622 |
---atatggtctgactcctcagatactttatctattattgtgttgtttaacggtgaattctcactatactttaacaaggttctgat |
4177704 |
T |
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