View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_low_30 (Length: 246)
Name: NF16120_low_30
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_low_30 |
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| [»] scaffold0049 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 21834031 - 21834245
Alignment:
| Q |
16 |
atcatgcagatctaaaagttttcatggacatttctaaaaataatttaacccatattttagtaatttttgtaaactacaatgagtaattcaaatttaagaa |
115 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
21834031 |
atcatgtagatctaaaagttttcatggacatttctaaaaataattaaacccatattttagtaatttttgtaaactacactgagtaattcaaacctaagaa |
21834130 |
T |
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| Q |
116 |
caagatctacactaggaatcaatctaactataatattaaccatggttactttgcaattcatacctggaaggcacttcggaagttggaggatacatgtgtt |
215 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21834131 |
caagatctacaccaggaatcaatctaactataatattaaccatggttactttgcaattcatacctggaaggcacttcagaagttggaggatacatgtgtc |
21834230 |
T |
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| Q |
216 |
agcagaattgatttc |
230 |
Q |
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||||||||||||||| |
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| T |
21834231 |
agcagaattgatttc |
21834245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 22069082 - 22068886
Alignment:
| Q |
16 |
atcatgcagatctaaaagttttcatggacatttctaaaaataatttaacccatattttagtaatttttgtaaactacaatgagtaattcaaatttaagaa |
115 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
22069082 |
atcatgtagatctaaaagttttcatggacatttctaaaaataattgaactcatattttagtaatttttgtaaactacaaggagtaattcaaatctaagaa |
22068983 |
T |
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| Q |
116 |
caagatctacactaggaatcaatctaactataatattaaccatggttactttgcaattcatacctggaaggcacttcggaagttggaggatacatgt |
212 |
Q |
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| T |
22068982 |
caagatctacaccaggaatcaatctaactataatattaaccatggttactttgcaattcatacctggaaggcacttcagaagttggaggatacatgt |
22068886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 13304 - 13184
Alignment:
| Q |
110 |
taagaacaagatctacactaggaatcaatctaactataatattaaccatggttactttgcaattcatacctggaaggcacttcggaagttggaggataca |
209 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| | |
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| T |
13304 |
taagaacaagatctacaccaggaatcaatctaactataatattacccatggttactttgcaattcatacgtggaaggcacttcagaagttggaggatata |
13205 |
T |
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| Q |
210 |
tgtgttagcagaattgatttc |
230 |
Q |
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| T |
13204 |
tgtgttagcagaattgatttc |
13184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 13601 - 13503
Alignment:
| Q |
16 |
atcatgcagatctaaaagttttcatggacatttctaaaaataatttaacccatattttagtaatttttgtaaactacaatgagtaattcaaatttaaga |
114 |
Q |
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|||||| ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
13601 |
atcatgtagatctaaaagttttgatggagatttctaaaaataattgaacccatattttagtaatttttgtaaactacactgagtaattcaaatctaaga |
13503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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