View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16120_low_5 (Length: 454)
Name: NF16120_low_5
Description: NF16120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16120_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 26335508 - 26335142
Alignment:
| Q |
18 |
gatggcgagtggcctcaacttgcatctccatttgtcctacacaatgaacaagatgcacaattagtttaagatatttattaatcaaccaatcaattaagaa |
117 |
Q |
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| T |
26335508 |
gatggcgagtggcctcaacttgcatatccatttgtcctacacaatgaacaagatgcacaattagtttaagatatttattaatcaaccaatcaattaagaa |
26335409 |
T |
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| Q |
118 |
aaatcatatagaaagttgaatagatattgattaataatagtcatcgataaagttagtgaaaattccgtactattaatatggttaccataaaacatttact |
217 |
Q |
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| T |
26335408 |
aaatcatatagaaagttgaatagatattgattaataatagtcatcgataaagttagtgaatattccgtactattaatatggttacaataaaacatttact |
26335309 |
T |
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| Q |
218 |
aaaaatggtattaaaatttcatgatcataaattcattaacatatttccctcaaaatttaaattaaattcatacagatatatacctaagagaagtataagt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
26335308 |
aaaaatggtattaaaatttcatgatcataaattcattaacatatttccctcaaaatttaaattaaattcatacagatatatacctaagagaagtacaggt |
26335209 |
T |
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| Q |
318 |
actagggaaagacataagaggatgaaaaggtgcttttgtgagtccatgatgaatagcaatgagagtg |
384 |
Q |
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| T |
26335208 |
actagggaaagacataagaggatgaaaaggtgcttttgtgagtccatgatgaatagcaatgagagtg |
26335142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 230 - 369
Target Start/End: Complemental strand, 26327377 - 26327239
Alignment:
| Q |
230 |
aaaatttcatgatcataaattcattaacatatttccctcaaaatttaaattaaattcatacagatatatacctaagagaagtataagtactagggaaaga |
329 |
Q |
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| T |
26327377 |
aaaattttatgatcataaattcataaacgtgtttccataaaaaaatgaac-aaattcatagtaatatatacctgagagaagtacaagtaatagggaaaga |
26327279 |
T |
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| Q |
330 |
cataagaggatgaaaaggtgcttttgtgagtccatgatga |
369 |
Q |
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| T |
26327278 |
catgagaggatgaaaaggtgcttttgtgagtccatgatga |
26327239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 26334981 - 26334938
Alignment:
| Q |
395 |
gtgaataattaagatttgattttgtcatttggctgcgtagttaa |
438 |
Q |
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| T |
26334981 |
gtgaataattaagatttgattttgtaatttggctgcgtagttaa |
26334938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 26327556 - 26327518
Alignment:
| Q |
18 |
gatggcgagtggcctcaacttgcatctccatttgtccta |
56 |
Q |
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| T |
26327556 |
gatggcgagtggcctcaacttgcatctccatttgtccta |
26327518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 26327014 - 26326974
Alignment:
| Q |
395 |
gtgaataattaagatttgattttgtcatttggctgcgtagt |
435 |
Q |
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| T |
26327014 |
gtgaataattaagatttgattttgtcattgggctgcttagt |
26326974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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