View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16121_high_9 (Length: 231)
Name: NF16121_high_9
Description: NF16121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16121_high_9 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 10845 - 10725
Alignment:
| Q |
13 |
attattcttgcaagcttccacaccttgatcataaacttgtctgagtttgatgcaaactgaatcccctttgatgcaaggtttaagtaattgcatgaaaaag |
112 |
Q |
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| T |
10845 |
attattcttgcaagcttccacaccttgatcataaacttgtctgagtttgatgcaaactgaatcccctttgatgcaaggtttaagtaattgcatgaaaaag |
10746 |
T |
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| Q |
113 |
agatcatcaaaattaacaagg |
133 |
Q |
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| T |
10745 |
agatcatcaaaattaacaagg |
10725 |
T |
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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 15697916 - 15697808
Alignment:
| Q |
28 |
ttccacaccttgatcataaa-cttgtctgagtttgatgcaaactgaatcccctttgatgcaaggtttaagtaattgcatgaaaaagagatcatcaaaatt |
126 |
Q |
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| T |
15697916 |
ttccacacctcgattataagtcttgtgtgagtttaatgcaaactgagtcccctttgatgcaaagtttcagtaatagcatgagagatagatcatcaaaatt |
15697817 |
T |
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| Q |
127 |
aacaagggc |
135 |
Q |
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| T |
15697816 |
tacaagggc |
15697808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 18711333 - 18711195
Alignment:
| Q |
17 |
ttcttgcaagcttccacaccttgatcataaactt---gtctgagtttgatgcaaactgaatcccctttgatgcaaggtttaagtaattgcatgaaaaaga |
113 |
Q |
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| T |
18711333 |
ttcttgcaaccttccacaccgcgatcataaacttcttgtatgagtttaatgcaaattgaatcccctttgatgcagggtttcgataattgagtgaaggcga |
18711234 |
T |
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| Q |
114 |
gatcatcaaaattaacaagggcttgtgcgaaagaacaag |
152 |
Q |
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| T |
18711233 |
gatcattagaattaaatagagcttgtgcgaaggaacaag |
18711195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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