View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16121_low_11 (Length: 357)
Name: NF16121_low_11
Description: NF16121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16121_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 41636908 - 41637231
Alignment:
| Q |
13 |
ggacatcatctacccaaccgacatcccaccttcttacattctcattcatttctcatctcaattaagtcatttcatcttaatgtttcaagttcgattgtca |
112 |
Q |
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| T |
41636908 |
ggacatcatttacccaaccgac--cccaccttcttacattctcattcatttctcgtctcaattaagtcattttatcttaatgtttcaagttcgattgtaa |
41637005 |
T |
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| Q |
113 |
aaataaaaagataaggttagagcatacaaaattttgcttatttttagtgagatcagaccactagaattaattctctgatatcaannnnnnnnnaaaatat |
212 |
Q |
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| T |
41637006 |
aaataaaaagataaggttaaagcatacaaaattttgcttatttttaatgagatcagaccactagaattaattctcagatatcaa-attttttaaaaatat |
41637104 |
T |
|
| Q |
213 |
tatcgtttctctcctttcttttcattcatttttggtgtcaaccattttcttgcgtcaatgtagaactaattccttaaatcggatgaatcgcataagggag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
41637105 |
tatcgtttctctcctttcttttcattcatttttggtgtcaaccattttcttgcgtcaatgtagaactagttccttaaatcggatgaatagcataagggag |
41637204 |
T |
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| Q |
313 |
taaagagagatttaacactagtgcatt |
339 |
Q |
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||||||||||||||||||||||||||| |
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| T |
41637205 |
taaagagagatttaacactagtgcatt |
41637231 |
T |
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