View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16121_low_2 (Length: 665)
Name: NF16121_low_2
Description: NF16121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16121_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 19 - 651
Target Start/End: Complemental strand, 39013361 - 39012727
Alignment:
| Q |
19 |
caattgtgagtttcattatactcttacacctagatttaactatgtacatgtttatatctctctatatagaatgacactatacttcaatggcttataggaa |
118 |
Q |
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| T |
39013361 |
caattgtgagtttcattatactcttacacctagatttaactatgtacatgtttatatctctctatatagaatgacactatacttcaatggcttataggaa |
39013262 |
T |
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| Q |
119 |
atggaaattatatacggtttgcgagggcaaatggaacaactttttcaagagatgtctgagctaaggaaaacaataaaaaactgtgcagacacacaaatgc |
218 |
Q |
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| T |
39013261 |
atggaaattatatacggtttgcgagggcaaatggaacaactttttcaagagatttctgagctaaggaaaacaataaaaaactgtgcagacacacaaatgc |
39013162 |
T |
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| Q |
219 |
agatgcaattacaacaatcccaaaaccaagaggttcacaaatgtatgtgattatttctgcttaacagtagtgtttggtgtatccgataaatgtcgtctcg |
318 |
Q |
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| T |
39013161 |
agatgcaattacaacaatcccaaaaccaagaggttcacaaatgtatgtgattatttctgcttaacagtagtgtttggtgtatccgataaatttcgtctcg |
39013062 |
T |
|
| Q |
319 |
cttttttcctttgctcttttcaacaaaaacattatgcacctctcattttgtatatgaaacatgattgcagttaaagacaagaaatccagtaacaagacat |
418 |
Q |
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| T |
39013061 |
cttttttcctttgctcttttcaacaaaaacattatgcacctctcattttgtatatgaaacatgattgcagttaaagacaagaaatccagtaacaagacat |
39012962 |
T |
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| Q |
419 |
caaagaaaggcatgtgctgcatttgcaatgaaaataaagtaaactcagttttatacaggtacttaa---nnnnnnnnctttctactaataattttgttca |
515 |
Q |
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| T |
39012961 |
caaagaaaggcatgtgctgcatttgcaatgaaaataaagtaaactcagttttatacaggtacttaattttattttatttttctactaataattttgttca |
39012862 |
T |
|
| Q |
516 |
atatatttatttcatgtaagcacaatagtactcataatgtctctacannnnnnnacagatgtgggcacatgtgtgcatgtctcaactgcgccaatgagtt |
615 |
Q |
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| T |
39012861 |
atatatttatttcatgtaagcacaacagtactcataatgtctctaca-ttttttacagatgtgggcacatgtgtgcatgtctcaactgtgccaatgagtt |
39012763 |
T |
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| Q |
616 |
gcaatggaaaagtggaaaatgtccaatatgccaagt |
651 |
Q |
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| T |
39012762 |
gcaatggaaaagtggaaaatgtccaatatgccaagt |
39012727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 647
Target Start/End: Complemental strand, 14860890 - 14860818
Alignment:
| Q |
575 |
tgtgggcacatgtgtgcatgtctcaactgcgccaatgagttgcaatggaaaagtggaaaatgtccaatatgcc |
647 |
Q |
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||||| ||||||||||||||||| || || |||||||| || | ||||| | ||||||||||||||||||| |
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| T |
14860890 |
tgtggacacatgtgtgcatgtctgaaatgtgccaatgatttacggtggaacaacggaaaatgtccaatatgcc |
14860818 |
T |
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