View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16121_low_4 (Length: 559)
Name: NF16121_low_4
Description: NF16121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16121_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 535
Target Start/End: Original strand, 41637664 - 41638191
Alignment:
| Q |
17 |
catcatcatctgattacgcaggaacacctcctcaacctcgtagtggtcattccgctgttaatattggaaaatccaaggttgtcatcttcggtggtcttgt |
116 |
Q |
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| T |
41637664 |
catcatcatctgattacgcaggaacacctcctcaacctcgtagtggtcattccgctgttaatattggaaaatccaaggttgtcgtcttcggtggtcttgt |
41637763 |
T |
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| Q |
117 |
cgacaaaaaatttctcactgatattcttgtctatgatattggttagtgacccttttctctcttcttttgtgggttgttgtcaaaatttggaatttgattc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41637764 |
cgacaaaaaatttctcactgatattcttgtctatgatattggttagtgacccttttctctcttcttttgtgggttgttgtcaaaatttggaatttgattc |
41637863 |
T |
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| Q |
217 |
gttttgtaatgttgaaattttcagaggctaagctatggtatcaaccggagtgtactggaagtgattcagatggacatgtgggtcccactccacgagcatt |
316 |
Q |
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| T |
41637864 |
gttttgtaatgttgaaattttcagaggctaagctatggtatcaaccggagtgtactggaagtgattcagatggacatgtgggtcccactccacgagcatt |
41637963 |
T |
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| Q |
317 |
tcatgttgctgttgctattgattgtcatatgtttgtttttggtggccgttctggtggtcagaggtctagttactgtttcag---------nnnnnnncat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41637964 |
tcatgttgctgttgctattgattgtcatatgtttgtttttggtggccgttctggtggtcagaggtctagttactgtttcagttttttttattttttttat |
41638063 |
T |
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| Q |
408 |
ttctcactatcttatcattacatgttttgtagatcacttagaatacattgagaaagagttaatcttgattatacttagaccctatttgggtaaacaacta |
507 |
Q |
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| T |
41638064 |
ttctcactatcttatcattacatgttttgtagatcacttagaatacattgagaaagagttaatcttgattatacttagaccctatttgggtaaacaacta |
41638163 |
T |
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| Q |
508 |
aactataaatgtacatataagtgcttat |
535 |
Q |
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| T |
41638164 |
aactataaatgtacatataagtgcttat |
41638191 |
T |
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