View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16121_low_7 (Length: 477)
Name: NF16121_low_7
Description: NF16121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16121_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 14550631 - 14551085
Alignment:
| Q |
18 |
ggtagcattatatatttaactaatgggaggaggaagtgattctgatgaatactgaaaactgattatagaaccttttacaaaacaatcccgtgtagaacgg |
117 |
Q |
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| T |
14550631 |
ggtagcattatatatttaactaataggaggaggaagtgattctgatgaatactgaaaactgattatagaaccttttacaaaacaatcccgtgtagaacgg |
14550730 |
T |
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| Q |
118 |
gtgatatacaagattattaaaactttcacatgcactcccggaatttaagctgttttctacagcagctttttcgtttgaaagaacgttcaatgccatgaat |
217 |
Q |
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| T |
14550731 |
gtgatatacaagattattaaaactttcacatgcactcccggaatttaagctgttttctacagcagctttttcgtttgaaagaacgttcaatgccatgaat |
14550830 |
T |
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| Q |
218 |
atcttnnnnnnn-acgcactctgccttaccctgtcctagtgctttgttttgttattgttcactatgagcttctgctattaacctttagacaattggagga |
316 |
Q |
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| T |
14550831 |
atcttccccccccacgcactctgccttaccctgtcttagtgctttgttttgttattgttcactatgagcttctgctattaacctttagacaattggagga |
14550930 |
T |
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| Q |
317 |
accataacactagtcgatttatagggtccctctttggaaaagaaacctatcttattctcttgatagtagagtatagttttggttgggacatttgcttttg |
416 |
Q |
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| T |
14550931 |
accataacacttgtcgatttagagggtccctctttggaaaagaaacctatcttattctcttgatagtagagtatagttttggttgggacatttgcttttg |
14551030 |
T |
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| Q |
417 |
ggaacaattttcgtactcatgctactactggcatgttacaaggtcttcatttcac |
471 |
Q |
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| T |
14551031 |
ggaacaattttcgtactcatgctactactggcatgttacaaggtcttcatttcac |
14551085 |
T |
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