View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16121_low_8 (Length: 475)
Name: NF16121_low_8
Description: NF16121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16121_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Original strand, 27371108 - 27371541
Alignment:
| Q |
17 |
taaatacatagtaaaatgttcaatcaattgtggtagctatggtgccgtaaacaaacctaaagaagtgttattggtgactgccgaaggtggtagagacggt |
116 |
Q |
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| T |
27371108 |
taaatacatagtaaaatgttgaatcaattgtggtagatatggtgccgaaaacaaacctaaagaggtattattggtgactgccgaaggtggtagagacggt |
27371207 |
T |
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| Q |
117 |
gaaggttgtagggacagtgactctaactcaattgttgaattatagaagcgataagtatcaaatcttaagcgacaacttggtttaacaacttctcctccta |
216 |
Q |
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| T |
27371208 |
gaaggttgtagcgacagtgactctaactcaattgttgaattgtagaagcgataagtatcaaatcttaagcgacaacttggtttaacaacttctcctccta |
27371307 |
T |
|
| Q |
217 |
atcccatataaaatccaccgaatggatcaagattaatttctgatatagccgtatataagcagttagagcattgttgcgaagacaaatcaggcatgcattg |
316 |
Q |
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| T |
27371308 |
atcccatataatatctattgaatggatcaggatcaatttctgagatagccgtatataagcagttagagcattgttgcgaagacaaatcaggcatgcattg |
27371407 |
T |
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| Q |
317 |
aacaagaccatatatggtgctaaaatctgtagtattcacaccatctgcctcgtatttgcgacgagagtcgccagatgcagcagctttgtctgttagattt |
416 |
Q |
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| T |
27371408 |
aacaagaccgtatatggtgctaaaatctgtagtattcacaccatctgcctcatatttgcgacgagagtcgccagat---gcagctttgtctgttagattt |
27371504 |
T |
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| Q |
417 |
ctcatcacaaaactaagtggttcaatgtacttgtccg |
453 |
Q |
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| T |
27371505 |
ctcatcacaaaactaagtggttcaatgtacttgtccg |
27371541 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 6522028 - 6521990
Alignment:
| Q |
296 |
agacaaatcaggcatgcattgaacaagaccatatatggt |
334 |
Q |
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| T |
6522028 |
agacaaatcaggtgtgcattgaacaagaccatatatggt |
6521990 |
T |
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