View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16121_low_9 (Length: 410)
Name: NF16121_low_9
Description: NF16121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16121_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 43413309 - 43413688
Alignment:
| Q |
18 |
ctttttaggaattccatgttggaggagagttaaagatgtctaaacataattgttgtttgttaatagtagtatacaagataacaaagagagcatatcatag |
117 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43413309 |
ctttttagggattccatgttggag---agttagagatgtctaaacataattgttgtttgttaatagta---tacaagataacaaagagagcatatcatag |
43413402 |
T |
|
| Q |
118 |
aagggtgatctataaaatcattcccaaaattagattgaatgattattannnnnnnnnnnnnnnacaagattgaaattgaatgatgatattgactagattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43413403 |
aagggtgatctataaaatcattcccaaaattagattgaatgattattatttttatttttttttacaagattgaaattgaatgatgatattgactagattt |
43413502 |
T |
|
| Q |
218 |
tttgaaaaatatttaatgagggtgtcatgatcaacttcgataaagttatggggtccagatgatcaaaagcacacaaagaccgtttataatattaccatgt |
317 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43413503 |
tgtgaaaaatatttaatgagggtgtcattatcaacttcgataaagttatggggtccagatgatcaaaagcacacaaagaccgtttataatattaccatgt |
43413602 |
T |
|
| Q |
318 |
gaagtggatggacaatcaacggtcactaacattacaacttataggtgaactttacttttttagcgacttaaagatattcttctgtg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43413603 |
gaagtggatggacaatcaacggtcactaacattacaacttataggtgaactttacttttttagcgacttaaagatattcttctgtg |
43413688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University