View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16122_high_3 (Length: 321)
Name: NF16122_high_3
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 3209791 - 3209488
Alignment:
| Q |
1 |
aatatacatgtacaatcgttcataaatatttgtgtctaacgccaccgattgtaaaccggatcaaataacgtactagcggacatcaccatgcaagtacctt |
100 |
Q |
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| T |
3209791 |
aatatacatgtacaatcgttcataaatatttgtgtctaacgccaccgattgtaaaccggatcaaataacgtactagcggacatcaccatgcaagtacctt |
3209692 |
T |
|
| Q |
101 |
aatttatatatcttgaaatttctaacaagtaagatgctatgctaactgtgttatcgttaacacccatgtcaatcattttccctccacactatataactta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209691 |
aatttatatatcttgaaatttctaacaagtaagatgctatgctagctgtgttatcgttaacacccatgtcaatcattttccctccacactatataactta |
3209592 |
T |
|
| Q |
201 |
actgcaagagattttcatgtatctttcccaaacatgaccttaaccaagatggaactaactccaatattgcttattggtttcattcttgtgctaagtatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209591 |
actgcaagagattttcatgtatctttcccaaacatgaccttaaccaagatggaactaactccaatattgcttattggtttcattcttgtgctaagtatct |
3209492 |
T |
|
| Q |
301 |
atac |
304 |
Q |
| |
|
|||| |
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| T |
3209491 |
atac |
3209488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 83 - 304
Target Start/End: Complemental strand, 3203736 - 3203514
Alignment:
| Q |
83 |
tcaccatgcaa-gtaccttaatttatatatcttgaaatttctaacaagtaagatgctatgctaactgtgttatcgttaacacccatgtcaatcattttcc |
181 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3203736 |
tcaccatgcaaagtaccttaatttatatatcttgaaatttttaacaagtaagatgctatgctagctgtgttatcgttaacacccatgtcaatcattttcc |
3203637 |
T |
|
| Q |
182 |
ctccacactatataacttaactgcaagagattttcatgtatctttcccaaacatgaccttaaccaagatggaactaactccaatattgcttattggtttc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203636 |
ctccacactatataacttaactgcaagagattttcatgtatctttcccaaacatgaccttaaccaagatggaactaactccaatattgcttattggtttc |
3203537 |
T |
|
| Q |
282 |
attcttgtgctaagtatctatac |
304 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3203536 |
attcttgtgctaagtatctatac |
3203514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 3217509 - 3217445
Alignment:
| Q |
231 |
aacatgaccttaaccaagatggaactaactccaatattgcttattggtttcattcttgtgctaag |
295 |
Q |
| |
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||||||| | ||| |||||||||||| |||||||| |||||| ||||||||||||| ||||||| |
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| T |
3217509 |
aacatgaacataaacaagatggaactcactccaatcttgcttcttggtttcattctcctgctaag |
3217445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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