View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16122_high_4 (Length: 271)
Name: NF16122_high_4
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 4889033 - 4889279
Alignment:
| Q |
13 |
actaaggagacagtttgagatttattgtctgtcacagtaagatactgtcacttgttgcaatctgtagcaaggttttataagatacatatttgcttaaaaa |
112 |
Q |
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| T |
4889033 |
actaaggagacagtttgagatttattgtctgtcacagtaagatactgtcacttgttgcaatctgtagcaaggttttataagatacatatttgcttaaaaa |
4889132 |
T |
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| Q |
113 |
atgttcaccttaaagaacatatgacataaaagtgacagaatgtatatgaaagatggaaaataacaccttgtgagccaataatggttctgcacaacagttt |
212 |
Q |
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| T |
4889133 |
atgttcaccttaaagaacatatgacataaaagtgacagaatgtatatgaaagatggaaaataacaccttgtgagccaataatggttgtgcacaacagttt |
4889232 |
T |
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| Q |
213 |
ggttctgcacaacggggacatgattggcttcttcacatccaacccta |
259 |
Q |
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| T |
4889233 |
ggttctgcacaacggcgacatgattggcttcttcacatccaacccta |
4889279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 4755720 - 4755984
Alignment:
| Q |
13 |
actaaggagacagtttgagatttattgtctgtcacagtaagatactgtcacttgttgcaatctgtagcaaggttttataaga------------------ |
94 |
Q |
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| T |
4755720 |
actaaggagacagtttgagatttattgtctgtcacagtaagatactgtcacttgttgcaatctgtagcaaggttttataagatgtgggtggttaacaaga |
4755819 |
T |
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| Q |
95 |
tacatatttgcttaaaaaatgttcaccttaaagaacatatgacataaaagtgacagaatgtatatgaaagatggaaaataacaccttgtgagccaataat |
194 |
Q |
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| T |
4755820 |
tacatatttgcttaaaaaatgttcaccttaaagaacatatgacataaaagtgacagaatgtatatgaaagatggaaaataacaccttgtgagccaataat |
4755919 |
T |
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| Q |
195 |
ggttctgcacaacagtttggttctgcacaacggggacatgattggcttcttcacatccaacccta |
259 |
Q |
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| T |
4755920 |
ggttctgcacaacagtttggttctgcacaacggggacatgattggcttcttgacatccaacccta |
4755984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 4742309 - 4742391
Alignment:
| Q |
13 |
actaaggagacagtttgagatttattgtctgtcacagtaagatactgtcacttgttgcaatctgtagcaaggttttataagat |
95 |
Q |
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| T |
4742309 |
actaagcagacagtttgagatttattgtctgtcatagtaagatactgtcacttgttgcaatctgtagcaaggttttagaagat |
4742391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 4742425 - 4742508
Alignment:
| Q |
100 |
atttgcttaaaaaatgttcaccttaaagaacatatgacataaaagtgacagaatgtatatgaaagatggaaaataacaccttgt |
183 |
Q |
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| T |
4742425 |
atttgcttaacaaatgttcaccttaaagaacaaaagacataaaagtgacagaatgcatgtgaaagatggaaaataactccttgt |
4742508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 4742968 - 4743023
Alignment:
| Q |
204 |
caacagtttggttctgcacaacggggacatgattggcttcttcac-atccaaccct |
258 |
Q |
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| T |
4742968 |
caacagtttggttctgcacgacgggaacatgattggcttcttcactatccaaccct |
4743023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 27136826 - 27136913
Alignment:
| Q |
106 |
ttaaaaaatgttcaccttaaagaacatatgacataaaagtgacagaatgtatatgaaagatggaaaataacaccttgtgagccaataa |
193 |
Q |
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| T |
27136826 |
ttaacaaatgttcaccttaaagaacaaaagacataaaagtgacaaagttcacgtgcaagatggaaaaaattaccttgtgagccaataa |
27136913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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