View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16122_high_6 (Length: 224)
Name: NF16122_high_6
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 29362662 - 29362443
Alignment:
| Q |
1 |
acattcattttaactcagatattaccataacaaaatctgaataatttatgcaaattaaactgatttatcaaatgtgtaaagtatgaaaataacttgtaaa |
100 |
Q |
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| T |
29362662 |
acattcattttaactcagatattaccataacaaaatctgaataatttatgcaaattaaactgatttatcaaatgtgt-aagtatgaaaataacttgtaaa |
29362564 |
T |
|
| Q |
101 |
ctaagcttttgactttattattctataatttttcttg----atgc-----gcgtttatcacaagctatgtttagaagtcaaagtcatcaattatcataat |
191 |
Q |
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| T |
29362563 |
ctaagattttgactttattattctataatttctcttgctataagcatcatgcgtttatcacaagctatgtttagaagtcaaagtcatcaattatcataat |
29362464 |
T |
|
| Q |
192 |
aattattcagtttgtgatatt |
212 |
Q |
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||||||||||||| ||||||| |
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| T |
29362463 |
aattattcagtttctgatatt |
29362443 |
T |
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