View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16122_low_1 (Length: 577)
Name: NF16122_low_1
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 5e-79; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 201 - 358
Target Start/End: Original strand, 7667097 - 7667254
Alignment:
| Q |
201 |
tactagccaaccgaatcaacatacaaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
300 |
Q |
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| T |
7667097 |
tactagccaaccgaatcaacatgcaaaagcatcttcttcaggtacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
7667196 |
T |
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| Q |
301 |
tccacatcaaactctagcggtaaagacatatcacacgaaagaattgtcccatcaagcg |
358 |
Q |
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| T |
7667197 |
tccacatcaaactctagcggtaaagacatatcacacgaaagaattgtcccatcaagcg |
7667254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 7087326 - 7087478
Alignment:
| Q |
201 |
tactagccaaccgaatcaacatacaaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
300 |
Q |
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| T |
7087326 |
tactagccaaccgaatcaacataccaaagcatcttcttcaggcacaaaggataagaagcatcatggtgtaagagaaactgtagagagaaagataatgttt |
7087425 |
T |
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| Q |
301 |
tccacatcaaactctagcggtaaagacatatcacacgaaagaattgtcccatc |
353 |
Q |
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| T |
7087426 |
tccacatcaaactctagtggtaaagacatatcacacgaaagaattgtcccatc |
7087478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 416 - 560
Target Start/End: Original strand, 7667312 - 7667456
Alignment:
| Q |
416 |
atgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacgcagcctatagaggacaaaaaattcagtgtcatagcactgactggtgacaa |
515 |
Q |
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| T |
7667312 |
atgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacacagcctatagaggacaaaaaattcagtgtcataacactgactggtgacaa |
7667411 |
T |
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| Q |
516 |
tagaggagcaacaatgcatgttggctctgaatcagataagaaata |
560 |
Q |
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| T |
7667412 |
tagaggagcaacaatgcatgttggctctgaatcagataagaaata |
7667456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 7666895 - 7667030
Alignment:
| Q |
1 |
tccgtcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacaca--gacaaaattagatgaggaaatatcaatctaaaaaataacatcaaag |
98 |
Q |
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| T |
7666895 |
tccgtcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacacaaagacaaaattagatgaggaaatatcaatctaaaaaataacatcaaag |
7666994 |
T |
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| Q |
99 |
tcccctttggaaactcaaaggaagttaccttcaacc |
134 |
Q |
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| T |
7666995 |
tcccctttggaaactcaaaggaagttaccttcaacc |
7667030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 416 - 558
Target Start/End: Original strand, 7087541 - 7087683
Alignment:
| Q |
416 |
atgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacgcagcctatagaggacaaaaaattcagtgtcatagcactgactggtgacaa |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
7087541 |
atgatattacaaagtttgttcataaaatatcagcctcagtgcaaccaacacaacctatggaggacaaaaaattcagtgtcataacactgactggtgacaa |
7087640 |
T |
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| Q |
516 |
tagaggagcaacaatgcatgttggctctgaatcagataagaaa |
558 |
Q |
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| T |
7087641 |
tagaggagcaacaatgcatgttggttcagaatcagataagaaa |
7087683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 7087129 - 7087259
Alignment:
| Q |
5 |
tcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacac--agacaaaattagatgaggaaatatcaatctaaaaaataacatcaaagtccc |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| | |||| ||||| ||||||||| |
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| T |
7087129 |
tcgaaaatcatccccgtgtcacaaccagagaatctttctaagcacacaaaaacaaaactagatgaggaaatatcaacatcaaaactaacaccaaagtccc |
7087228 |
T |
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| Q |
103 |
ctttggaaactcaaaggaagttaccttcaacc |
134 |
Q |
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| T |
7087229 |
atttggaaactcaaaggaagtt-ccttcaacc |
7087259 |
T |
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