View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16122_low_12 (Length: 240)

Name: NF16122_low_12
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16122_low_12
NF16122_low_12
[»] chr6 (16 HSPs)
chr6 (8-225)||(2924055-2924272)
chr6 (118-193)||(9171818-9171893)
chr6 (111-178)||(7031030-7031097)
chr6 (111-157)||(9158547-9158593)
chr6 (113-157)||(9129000-9129044)
chr6 (63-110)||(7038608-7038655)
chr6 (113-174)||(9171930-9171991)
chr6 (118-178)||(7043198-7043258)
chr6 (97-183)||(7048059-7048145)
chr6 (111-157)||(9128861-9128907)
chr6 (111-157)||(9158410-9158456)
chr6 (99-136)||(7027351-7027388)
chr6 (129-178)||(7042602-7042651)
chr6 (15-60)||(7043044-7043091)
chr6 (97-157)||(7048006-7048066)
chr6 (119-179)||(7048225-7048285)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 2924055 - 2924272
Alignment:
Q  8 tagattatacttataggtttttcttatagcttatgtttttgcttatagcttctgattgtaggttttacttgtagcttctgcttataacatctaattgttt 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2924055 tagattctacttataggtttttcttatagcttatgtttttgcttatagcttctgattgtaggttttacttgtagcttctgcttataacatctaattgttt 2924154  T
Q  108 atagcttctacttataggttttgcttatagcctctaattgtttatagcttatctttttgcttatagcttctaattgtttctaattttgtttatagttgat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2924155 atagcttctacttataggttttgcttatagcctctaattgtttatagcttatctttttgcttatagcttctaattgtttctaattttgtttatagttgat 2924254  T
Q  208 gtgcttaattatattcat 225  Q
    ||||||||||||||||||    
T  2924255 gtgcttaattatattcat 2924272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 9171893 - 9171818
Alignment:
Q  118 cttataggttttgcttatagcctctaattgtttatagcttatctttttgcttatagcttctaattgtttctaattt 193  Q
    |||||||||||||||||||||||||||||||  ||||| | | |||||||||||||||||||||||||| ||||||    
T  9171893 cttataggttttgcttatagcctctaattgtaaatagcatctgtttttgcttatagcttctaattgtttataattt 9171818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 7031097 - 7031030
Alignment:
Q  111 gcttctacttataggttttgcttatagcctctaattgtttatagcttatctttttgcttatagcttct 178  Q
    |||||||||||| ||||||||||||||| |||||| ||||||||||| | ||||||||| ||||||||    
T  7031097 gcttctacttattggttttgcttatagcttctaatagtttatagcttttgtttttgcttgtagcttct 7031030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 9158547 - 9158593
Alignment:
Q  111 gcttctacttataggttttgcttatagcctctaattgtttatagctt 157  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  9158547 gcttctccttataggttttgcttatagcctctaattgtttatagctt 9158593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 9129000 - 9129044
Alignment:
Q  113 ttctacttataggttttgcttatagcctctaattgtttatagctt 157  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  9129000 ttctccttataggttttgcttatagcctctaattgtttatagctt 9129044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 7038655 - 7038608
Alignment:
Q  63 ttgtaggttttacttgtagcttctgcttataacatctaattgtttata 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  7038655 ttgtaggttttgcttgtagcttctgcttataacatctaattgtctata 7038608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 9171991 - 9171930
Alignment:
Q  113 ttctacttataggttttgcttatagcctctaattgtttatagcttatctttttgcttatagc 174  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||| | ||||| ||||||||    
T  9171991 ttctgcttataggttttgattatagcttctaattgtttatagcttttgtttttacttatagc 9171930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 7043258 - 7043198
Alignment:
Q  118 cttataggttttgcttatagcctctaattgtttatagcttatctttttgcttatagcttct 178  Q
    ||||||||||||| ||||||| ||||||||||||| |||| |  |||||||||||||||||    
T  7043258 cttataggttttgattatagcttctaattgtttatggcttctggttttgcttatagcttct 7043198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 7048145 - 7048059
Alignment:
Q  97 tctaattgtttatagcttctacttataggttttgcttatagcctctaattgtttatagcttatctttttgcttatagcttctaattg 183  Q
    |||||||||||||  ||||| || |||| ||||| ||| |||  ||| ||||||||||||| | ||||||  |||||||||||||||    
T  7048145 tctaattgtttatcacttctgctcatagcttttgattacagctcctacttgtttatagcttctgtttttgtgtatagcttctaattg 7048059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 9128861 - 9128907
Alignment:
Q  111 gcttctacttataggttttgcttatagcctctaattgtttatagctt 157  Q
    |||||| ||||||||||||| ||||||| | ||||||||||||||||    
T  9128861 gcttctgcttataggttttgattatagcttttaattgtttatagctt 9128907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 9158410 - 9158456
Alignment:
Q  111 gcttctacttataggttttgcttatagcctctaattgtttatagctt 157  Q
    |||||| ||||||||||||| ||||||| | ||||||||||||||||    
T  9158410 gcttctgcttataggttttgattatagcttttaattgtttatagctt 9158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 7027388 - 7027351
Alignment:
Q  99 taattgtttatagcttctacttataggttttgcttata 136  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  7027388 taattgtttatagcttctgcttataggttgtgcttata 7027351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 7042651 - 7042602
Alignment:
Q  129 tgcttatagcctctaattgtttatagcttatctttttgcttatagcttct 178  Q
    |||||||||| ||||||||||||| |||| | ||||||||||||| ||||    
T  7042651 tgcttatagcttctaattgtttatcgcttctgtttttgcttatagattct 7042602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 7043091 - 7043044
Alignment:
Q  15 tacttataggtttttcttatagc--ttatgtttttgcttatagcttct 60  Q
    |||||||||||||||||||||||  || | ||||||||||||||||||    
T  7043091 tacttataggtttttcttatagcctttttttttttgcttatagcttct 7043044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 7048066 - 7048006
Alignment:
Q  97 tctaattgtttatagcttctacttataggttttgcttatagcctctaattgtttatagctt 157  Q
    |||||||| |||| |||||| ||||||| ||||||||||  | ||||| ||||||||||||    
T  7048066 tctaattgcttatggcttctgcttatagcttttgcttatgtcttctaactgtttatagctt 7048006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 7048285 - 7048225
Alignment:
Q  119 ttataggttttgcttatagcctctaattgtttatagcttatctttttgcttatagcttcta 179  Q
    |||||| || |||||| ||| ||||||||||||| |||| | |||||||||| ||||||||    
T  7048285 ttatagcttatgcttacagcttctaattgtttatcgcttctgtttttgcttacagcttcta 7048225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University