View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16122_low_13 (Length: 236)
Name: NF16122_low_13
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3601960 - 3601737
Alignment:
| Q |
1 |
ttatccaaaaaatcgttaatgttggaaattgactcaaaattgatattgaagttctgaaaaaatcgtggcgtgattaaaaatccaaactttcttataaaat |
100 |
Q |
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| T |
3601960 |
ttatccaaaaaatcgttaatgttgaaaattgattcaaaattgatattgaagttctgaaaaaatcgtggcgtgattaaaaatccaaacttttttataaaat |
3601861 |
T |
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| Q |
101 |
aatattgtgtc--tttcttttataaatgacgataaatgagataaaataaatgaaacaaaactgttaatgcaatgttcatctgcacaatatatataattaa |
198 |
Q |
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| T |
3601860 |
aatattgtgtctatatcttttataaatgacgataaatgggataaagtaaatgaaacaaaaccgttaatgcaatgttcatctgcacaatatatataattaa |
3601761 |
T |
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| Q |
199 |
aaaacattataaaaccttgtttct |
222 |
Q |
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|||||||||||||||||||||||| |
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| T |
3601760 |
aaaacattataaaaccttgtttct |
3601737 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 4175383 - 4175327
Alignment:
| Q |
18 |
aatgttggaaattgactcaaaattgatattgaagttctgaaaaaatcgtggcgtgat |
74 |
Q |
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| T |
4175383 |
aatgttgataattgactcaaaattgatgttgaagttcataaaaaattgtggggtgat |
4175327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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