View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16122_low_15 (Length: 211)
Name: NF16122_low_15
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_low_15 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 34986695 - 34986489
Alignment:
| Q |
1 |
atataatgcaaattctggttgtgtctaaacctgtaaaagtgtagcatagtacaaacaaagcattgatacgaaaatgataccgtcaactcattagtacaat |
100 |
Q |
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| T |
34986695 |
atataatgcaaattctggttgtgtctaaacctgtaaaagtgtagcatagtacaaa----gcattgatacgaaaatgataccgtcaactcactagtacaat |
34986600 |
T |
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| Q |
101 |
aaaacaaaatcatagattaaaaccttcagcagagacttaaatctcatgctgattttacaaggacaaaaactatgtgtaactcatagttaaagagctagga |
200 |
Q |
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| T |
34986599 |
aaaacaaaatcatagattaaaaccttcagcagagacttaaatctcatgctgattttacaaggacaaaaactatgtgtaactcatagttaaagagctagga |
34986500 |
T |
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| Q |
201 |
tcatagattaa |
211 |
Q |
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| T |
34986499 |
tcatagattaa |
34986489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 34986434 - 34986382
Alignment:
| Q |
137 |
ttaaatctcatgctgattttacaaggacaaaaactatgtgtaactcatagtta |
189 |
Q |
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| T |
34986434 |
ttaaaactcatgctgattttacaaggacaaaaactatgtgtaactcatagtta |
34986382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 34993250 - 34993200
Alignment:
| Q |
137 |
ttaaatctcatgctgattttacaaggacaaaaactatgtgtaactcatagt |
187 |
Q |
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| T |
34993250 |
ttaaaactcatgctgattttacaaggacaaaaactatgtgcaactcatagt |
34993200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 34978229 - 34978170
Alignment:
| Q |
27 |
aaacctgtaaaagtgtagcatagtacaaacaaagcattgatacgaaaatgataccgtcaactca |
90 |
Q |
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| T |
34978229 |
aaacctgtaaaagtgtggtatagtacaaa----gcattgatacgaaaatgatgccgtcaactca |
34978170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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