View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16122_low_16 (Length: 209)
Name: NF16122_low_16
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 7231339 - 7231521
Alignment:
| Q |
12 |
ccaagaatatacattatatataaatactcgagtatattctttcagtaaggaagaagatcctaattataagagggtcacttttaatataataattcatgac |
111 |
Q |
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| T |
7231339 |
ccaataatatacattatatataaatactcgagtatattctttcagtaaggaagaagatcctaattgtaagagggtcacttttaatataataattcatgac |
7231438 |
T |
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| Q |
112 |
gtggtcaaactttatgctatattgtccaggaccaaactagaaattacctctttcatcttgatgaccaggtggtatcatcacat |
194 |
Q |
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| T |
7231439 |
gtggtcaaactttatgctatattgtccaggaccaaactagaaattacctctttcatcttgatgaccaggtggtatcatcacat |
7231521 |
T |
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