View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16122_low_3 (Length: 457)
Name: NF16122_low_3
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 45604068 - 45604497
Alignment:
| Q |
21 |
cctgtggatattgaaatcatttgaatttcgtaggaggaatatagtaaatacaatacatgacatacataattcagtatgtataattcaaagccctcaaacg |
120 |
Q |
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| T |
45604068 |
cctgtggaaattgaaatcatttgaatttggtaggaggaatatagtaaatacaatacattacatacataattcagtatgtataattcaaagccctcaaacg |
45604167 |
T |
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| Q |
121 |
tacattgcatcattgcttagattgaaattgttacttaaatcaactccaggcatgcaatggacaaacccatttcccacaatttgatttgcaaatttaatct |
220 |
Q |
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| T |
45604168 |
tacattgcatcattgcttagattgaaattgttacttaaatcaactccaggcatgcaatggacaaacccatttcccacaatttgatttgcaaatttaatct |
45604267 |
T |
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| Q |
221 |
gtgaattgaacatctcagtggctgaaatgttagtcacactattatgaaactctccattgaagggtccttcttgcattgtaacttcttgaaaagctgaatt |
320 |
Q |
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| T |
45604268 |
gtgaattgaacatctcagtggctgaaatgttagtcacactattatgaaactctccattgaagggtccttcttgcattgtaacttcttgaaaagctgaatt |
45604367 |
T |
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| Q |
321 |
ttgatcaaatccatttctcatgaccaaagattcaactgaatttgaagagttcc------tattattaacatgatccaatgaaagccattcagcaaacaat |
414 |
Q |
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| T |
45604368 |
ttgatcaaatccatttctcatgaccaaagattcaactgaatttgaagagttcctattattattattaacatgatccaatgaaagccattcagcaaacaat |
45604467 |
T |
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| Q |
415 |
agttttggtaaggtgctttgatgagtctct |
444 |
Q |
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| T |
45604468 |
agttttggtaaggtgctttgatgagtctct |
45604497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 425
Target Start/End: Complemental strand, 20070264 - 20070142
Alignment:
| Q |
303 |
ttcttgaaaagctgaattttgatcaaatccatttctcatgaccaaagattcaactgaatttgaagagttcctattattaacatgatccaatgaaagccat |
402 |
Q |
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| T |
20070264 |
ttcttgaaaaattaaattttgatcatagccatttttcaagaccaaagaatcatctgaatttagagagttgcaaccatttacttgatctagtgaaagccac |
20070165 |
T |
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| Q |
403 |
tcagcaaacaatagttttggtaa |
425 |
Q |
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| T |
20070164 |
tcagaaaataaaagttttggtaa |
20070142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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