View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16122_low_4 (Length: 451)

Name: NF16122_low_4
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16122_low_4
NF16122_low_4
[»] chr8 (9 HSPs)
chr8 (13-433)||(4150485-4150905)
chr8 (196-429)||(4142469-4142704)
chr8 (197-362)||(4120112-4120277)
chr8 (189-365)||(4130190-4130366)
chr8 (190-362)||(4159557-4159729)
chr8 (13-146)||(4142760-4142893)
chr8 (13-128)||(4130426-4130541)
chr8 (14-130)||(4120340-4120456)
chr8 (13-98)||(4159837-4159922)
[»] chr7 (5 HSPs)
chr7 (199-311)||(19939299-19939411)
chr7 (199-311)||(19970438-19970550)
chr7 (198-310)||(20289417-20289529)
chr7 (199-274)||(20062386-20062461)
chr7 (199-307)||(20294824-20294932)
[»] chr2 (3 HSPs)
chr2 (200-278)||(2704308-2704386)
chr2 (197-278)||(2723498-2723579)
chr2 (197-278)||(2745328-2745409)
[»] chr4 (1 HSPs)
chr4 (198-274)||(40823658-40823734)
[»] chr3 (1 HSPs)
chr3 (203-295)||(1050651-1050743)


Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Complemental strand, 4150905 - 4150485
Alignment:
Q  13 aatatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatcttat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4150905 aatatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatctcat 4150806  T
Q  113 ttgatattataatgttggaatcagtgttacaaatgagtggtttaattttannnnnnnnacttggggttatagtaacatatgttctaaatgcagtggttat 212  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  4150805 ttgatattataatgttggaattagtgttacaaatgagtggtttaattttattttttttacttggggttatagtaacatatgttctaaatgcagtggttat 4150706  T
Q  213 atgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgttagcggaagaagaaata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4150705 atgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgttagcggaagaagaaata 4150606  T
Q  313 gtagcttttctcatcacgaggatactcttagccttgtaggctttgtaagtctaaatactccatgccttcattacatactatgagaaaagaagtgttggca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4150605 gtagcttttctcatcacgaggatactcttagccttgtaggctttgtaagtctaaatactccatgccttcattacatactatgagaaaagaagtgttggca 4150506  T
Q  413 atacactttcaacacttcatt 433  Q
    |||||||||||||||||||||    
T  4150505 atacactttcaacacttcatt 4150485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 196 - 429
Target Start/End: Complemental strand, 4142704 - 4142469
Alignment:
Q  196 ctaaatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgt 295  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || || ||| ||||||| ||| ||||    
T  4142704 ctaaatgcagtggttatatgccacctgaatatgcaatggaggggcttttctcagagaaatcagatgtctatagtttcggagttttattgctagagcttgt 4142605  T
Q  296 tagcggaagaagaaatagtagcttttctcatcacgaggatactcttagccttgtaggctttgtaagtctaaatactccatgccttcattac--atactat 393  Q
    ||| ||| |||||||||||||||||| |||   ||||||| |||||||||||||||||||||||||| || ||| || ||| ||| |||||  |||||||    
T  4142604 tagtggacgaagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatagtcgatgtctttattacatatactat 4142505  T
Q  394 gagaaaagaagtgttggcaatacactttcaacactt 429  Q
     | | ||||||||||  |||||||||||||||||||    
T  4142504 aatacaagaagtgttaacaatacactttcaacactt 4142469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 197 - 362
Target Start/End: Complemental strand, 4120277 - 4120112
Alignment:
Q  197 taaatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgtt 296  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||     
T  4120277 taaatgcagtggttatatgccgccagaatatgcaatggaggggcttttctctgagaaatcagatgtatatagctttggggttttattgctagagattgtc 4120178  T
Q  297 agcggaagaagaaatagtagcttttctcatcacgaggatactcttagccttgtaggctttgtaagt 362  Q
    || ||  |||||||||  ||||||| |||   ||||||| | ||||||||||||||||||||||||    
T  4120177 agtgggcgaagaaatacgagcttttatcacagcgaggattcacttagccttgtaggctttgtaagt 4120112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 189 - 365
Target Start/End: Complemental strand, 4130366 - 4130190
Alignment:
Q  189 atatgttctaaatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctgg 288  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||| ||| |||||||| || ||||||||||| ||||||||||| ||| ||||||| |    
T  4130366 atatgctctaaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctag 4130267  T
Q  289 agattgttagcggaagaagaaatagtagcttttctcatcacgaggatactcttagccttgtaggctttgtaagtcta 365  Q
    ||||||| |||||| |||||||||  ||||||| |||  | |||||| ||||||||||||| |||||||||||||||    
T  4130266 agattgtaagcggacgaagaaataacagcttttatcaaaatgaggattctcttagccttgttggctttgtaagtcta 4130190  T

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Target: chr8; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 190 - 362
Target Start/End: Complemental strand, 4159729 - 4159557
Alignment:
Q  190 tatgttctaaatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctgga 289  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||| ||| ||||| | ||    
T  4159729 tatgctctaaatgcagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttggagttttattgttaga 4159630  T
Q  290 gattgttagcggaagaagaaatagtagcttttctcatcacgaggatactcttagccttgtaggctttgtaagt 362  Q
    ||||||||||||  ||||||| ||||||||||  ||  |||| ||| ||||||||||||| ||||||||||||    
T  4159629 gattgttagcggccgaagaaacagtagcttttaccacaacgaagattctcttagccttgttggctttgtaagt 4159557  T

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Target: chr8; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 4142893 - 4142760
Alignment:
Q  13 aatatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatcttat 112  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| ||    
T  4142893 aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcat 4142794  T
Q  113 ttgatattataatgttggaatcagtgttacaaat 146  Q
      || |||| ||||||||||| | | ||||||||    
T  4142793 cggacattacaatgttggaattaatattacaaat 4142760  T

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Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 4130541 - 4130426
Alignment:
Q  13 aatatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatcttat 112  Q
    |||||||||||| |||||||| ||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| | ||    
T  4130541 aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcat 4130442  T
Q  113 ttgatattataatgtt 128  Q
    |||| | |||||||||    
T  4130441 ttgacaatataatgtt 4130426  T

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Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 4120456 - 4120340
Alignment:
Q  14 atatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatcttatt 113  Q
    ||||||||||| || ||||| ||||||||||||  |||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||| |||    
T  4120456 atatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaatcctatctcatt 4120357  T
Q  114 tgatattataatgttgg 130  Q
      | |||||| ||||||    
T  4120356 gaacattatattgttgg 4120340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 4159922 - 4159837
Alignment:
Q  13 aatatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaag 98  Q
    |||||||||||| |||||||| ||||||||||||   ||||||||||||||| | |||||||| ||||||||||||||||||||||    
T  4159922 aatatcagactttggtttagctagaattgttaaaggaggagaagatgatgaaacaaacacaaatagggttgttggaacttagtaag 4159837  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 19939299 - 19939411
Alignment:
Q  199 aatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgttag 298  Q
    ||||||||||||||||| | || |||||||||||| | || || || ||||| ||||| ||||||| ||||||||| ||| || | || |||||| ||||    
T  19939299 aatgcagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagttttacttcttgagattattag 19939398  T
Q  299 cggaagaagaaat 311  Q
     ||||||||||||    
T  19939399 tggaagaagaaat 19939411  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 19970438 - 19970550
Alignment:
Q  199 aatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgttag 298  Q
    ||||||||||||||||| | || |||||||||||| | || || || ||||| ||||| ||||||| ||||||||| ||| || | || |||||| ||||    
T  19970438 aatgcagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagttttacttcttgagattattag 19970537  T
Q  299 cggaagaagaaat 311  Q
     ||||||||||||    
T  19970538 tggaagaagaaat 19970550  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 310
Target Start/End: Original strand, 20289417 - 20289529
Alignment:
Q  198 aaatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgtta 297  Q
    |||||||||||||||||  | || ||||| |||||| | || || || || || ||||||||||||| ||||||||| ||| | || || |||||| |||    
T  20289417 aaatgcagtggttatatatctcccgaatacgcaatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttgttactagagattatta 20289516  T
Q  298 gcggaagaagaaa 310  Q
    |||| ||||||||    
T  20289517 gcgggagaagaaa 20289529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 20062461 - 20062386
Alignment:
Q  199 aatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttgg 274  Q
    ||||||||||||||||| | |||||||| |||||| | || ||||| || || ||||||||||| | |||||||||    
T  20062461 aatgcagtggttatatgtctcctgaatacgcaatgcaaggacttttttcagagaaatcagatgtttttagctttgg 20062386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 20294824 - 20294932
Alignment:
Q  199 aatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgttag 298  Q
    |||||||||| |||||| | ||||||||||||||| | ||  | || || || ||||||||||| | ||||||||| ||| |  |||| ||||||||||     
T  20294824 aatgcagtggctatatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttgatgctagagattgttac 20294923  T
Q  299 cggaagaag 307  Q
    ||| |||||    
T  20294924 cgggagaag 20294932  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 2704386 - 2704308
Alignment:
Q  200 atgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggtt 278  Q
    ||||||||| |||||| | || ||||| |||||||||||| | || || || ||||||||||| | |||||||||||||    
T  2704386 atgcagtggatatatgtctccagaatacgcaatggaggggttgttttcagagaaatcagatgtttttagctttggggtt 2704308  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 2723579 - 2723498
Alignment:
Q  197 taaatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggtt 278  Q
    |||||||||||| || ||| | || |||||||||||||| ||||| || || || ||||||||||| | ||| |||||||||    
T  2723579 taaatgcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggtt 2723498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 2745409 - 2745328
Alignment:
Q  197 taaatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggtt 278  Q
    |||||||||||| || ||| | || |||||||||||||| ||||| || || || ||||||||||| | ||| |||||||||    
T  2745409 taaatgcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggtt 2745328  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 40823734 - 40823658
Alignment:
Q  198 aaatgcagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttgg 274  Q
    |||||||| ||||||||| | ||||||||||| ||| | || || || || || ||||||||||||| |||||||||    
T  40823734 aaatgcagcggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgtctttagctttgg 40823658  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 1050651 - 1050743
Alignment:
Q  203 cagtggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgt 295  Q
    ||||||||||||| | || |||||||| || || |||||||||||   |||||| ||||| | ||||||||| ||  ||||||| ||||||||    
T  1050651 cagtggttatatggctccagaatatgccattgatgggcttttctccacaaaatctgatgtatttagctttggcgtattattgctagagattgt 1050743  T

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