View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16122_low_5 (Length: 404)
Name: NF16122_low_5
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_low_5 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 49020469 - 49020832
Alignment:
| Q |
18 |
catttgtgactttgcatttgatccttgtggatattcaatgaatggaatggatgatgattggtattccaccattcatgttacaccagaagatggtttcagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49020469 |
catttgtgactttgcatttgatccttgtggatattcaatgaatggaatggatgatgattggtattccaccattcatgttacaccagaagatggtttcagc |
49020568 |
T |
|
| Q |
118 |
tatgcaagctttgaatgtgttgggtctgttaacgacaacatagtacatgtgttaaggaaagttgttcagattttccgaccaggtactatgtctatatcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49020569 |
tatgcaagctttgaatgtgttgggtctgttaacgacaacatagtacatgtgttaaggaaagttgttcagattttccgaccaggtactatgtctatatcaa |
49020668 |
T |
|
| Q |
218 |
tgacatgcagtaattatagtaatgagatgttgaagaagatggtcaatgcagttgagccacttggactcaaatgtaggagtcgtgccgtggatcggttccc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49020669 |
tgacatgcagtaattatagtaatgagatgttgaagaagatggtgaatgcagttgagccacttggactcaaatgtaggagtcgtgccgtggatcggtttcc |
49020768 |
T |
|
| Q |
318 |
ggcggctgatatggttgtttttcaaacttttacggctcgccggagaaatgtttaatgcccgcga |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49020769 |
ggcggctgatatggttgtttttcaaacttttacggctcgccggagaaatgtttaatgcccgcga |
49020832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 7081348 - 7081223
Alignment:
| Q |
18 |
catttgtgactttgcatttgatccttgtggatattcaatgaatggaatggatgatgattggtattccaccattcatgttacaccagaagatggtttcagc |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||| || || ||||| ||||||||||| || || |||||||||| ||| |
|
|
| T |
7081348 |
catttgtgattttgcatttgatccttgtggctattcaatgaatggaatggatggagaatgctattctaccattcatgtgactccggaagatggttatagc |
7081249 |
T |
|
| Q |
118 |
tatgcaagctttgaatgtgttgggtc |
143 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
7081248 |
tatgcaagctttgaatgtgtggggtc |
7081223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 4896 - 4942
Alignment:
| Q |
85 |
accattcatgttacaccagaagatggtttcagctatgcaagctttga |
131 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
4896 |
accattcatgttactccagaagatgggttcagttatgcaagctttga |
4942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 5912402 - 5912517
Alignment:
| Q |
17 |
acatttgtgactttgcatttgatccttgtggatattcaatgaatggaatggatgatgattggtat-tccaccattcatgttacaccagaagatggtttca |
115 |
Q |
| |
|
|||| |||||||||| |||||| |||||||| || |||||||| ||||| || | | || ||| ||||| || ||||| || ||||||||||| |||| |
|
|
| T |
5912402 |
acatatgtgactttgaatttgaaccttgtgggtactcaatgaacggaattgaagga-agtgctatatccactatccatgtcaccccagaagatggattca |
5912500 |
T |
|
| Q |
116 |
gctatgcaagctttgaa |
132 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5912501 |
gctatgcaagctttgaa |
5912517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 5902802 - 5902754
Alignment:
| Q |
17 |
acatttgtgactttgcatttgatccttgtggatattcaatgaatggaat |
65 |
Q |
| |
|
||||||||||||||| |||||| ||||| || || |||||||||||||| |
|
|
| T |
5902802 |
acatttgtgactttgaatttgaaccttgcgggtactcaatgaatggaat |
5902754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 362861 - 362820
Alignment:
| Q |
91 |
catgttacaccagaagatggtttcagctatgcaagctttgaa |
132 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
362861 |
catgtcaccccagaagatgggttcagctatgcaagctttgaa |
362820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University