View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16122_low_7 (Length: 312)
Name: NF16122_low_7
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 43816351 - 43816635
Alignment:
| Q |
14 |
tactcaccggaaaggatttgatcaagacttttattaggaagaaattcataaaccaacaagctttcagggccatcaatactacaccccaaaagtttgacca |
113 |
Q |
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| T |
43816351 |
tactcaccggaaaggatttgatctagacttttattaggaagaaattcataaaccaacaagctttcagggccatcaatactacaccccaaaagtttgacca |
43816450 |
T |
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| Q |
114 |
cattcttatgttgaatcccattaatcaaattgacttcactgaataacacatctgtccattgccttgtatcaaaaaacaaacgtttaacaacaacaattct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43816451 |
cattcttatgttgaatcccattaatcaaattgacttcactgaataacacatctgtccattgccttgtatcaaaaaacaaacgtttaacaacaacaattct |
43816550 |
T |
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| Q |
214 |
tcctgaggggagtgttcctttgaacacagaaccttctccttcaccatgcaagcctaatttatttgcaggatcaaaataatttgtg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43816551 |
tcctgaggggagtgttcctttgaacacagaaccttctccttcaccatgcaagcctaatttatttgcagaatcaaaataatttgtg |
43816635 |
T |
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