View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16122_low_8 (Length: 304)
Name: NF16122_low_8
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 5620228 - 5620495
Alignment:
| Q |
19 |
aagtataaattaaaagctctccggtgtgatttcataagtttttagatttcccattcttgttttcaatgtcacacattttcctaactgttaacttttatca |
118 |
Q |
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| T |
5620228 |
aagtataaattaaaagttctccggtgtgatttcataggtttttagatttcccattcttgttttcaatgtcacacattttcctaactgttaacttttatca |
5620327 |
T |
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| Q |
119 |
tatattggggacctgtacattttgttatagttaaaaataaggaaggttcgtgttagattaaaatagagggagacttgtataattctaaagaagtattatt |
218 |
Q |
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| T |
5620328 |
tatattggggacctgtacattttgttatagttaaaaataaggaaggttcgtgttagattaaaatagagggagacttgtataattctaaagaagtattatt |
5620427 |
T |
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| Q |
219 |
ggttgatgaagtatattctcttgacaaatttctgtaatgagctcaattcatcatttaagtgaaacatt |
286 |
Q |
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| T |
5620428 |
ggttgatgaagtatattctcttgacaaatttctgtaatgagctcaattcatcatttaagtgaaacatt |
5620495 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 258
Target Start/End: Complemental strand, 21425238 - 21425062
Alignment:
| Q |
84 |
atgtcacacattttcctaactgttaacttttatcat---atattggggacctgtacattttgttatagttaaaaataaggaaggttcgtgttagatt--- |
177 |
Q |
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| T |
21425238 |
atgtcatacattttccttattgctaacttttatcatggcatatagggaagctgtccgttttattgaagttaaaa-taaggaaggttcgtgtaagattgtg |
21425140 |
T |
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| Q |
178 |
aaaatagagggagacttgtataattctaaagaagtattattggttgatgaagtatattctcttgacaaatttctgtaatga |
258 |
Q |
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| T |
21425139 |
ataatagagagagaccggtatagttcactagaagtagttttggt---tgaagtatattctcttgacaagtttttgtaatga |
21425062 |
T |
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