View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16122_low_9 (Length: 278)
Name: NF16122_low_9
Description: NF16122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16122_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 46891200 - 46890949
Alignment:
| Q |
8 |
cgaagaatatggcttataaacatggagctgcggcatatggtggaaacaagccgggtataatagtcatggtatagactatggcaactaacacaaagtccgc |
107 |
Q |
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| T |
46891200 |
cgaaaaatatggcttataaacatggagctgcggcatatggtggaaacaagccgggtataatagtcatggtatagactatggccactagcacaaagtccgc |
46891101 |
T |
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| Q |
108 |
catgccacagcccatttatggcagaaatgtgataacaaggagataatgtgatcattaaacaatgatggaatcattcagaaccttaggaaggtacatttat |
207 |
Q |
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| T |
46891100 |
catgccacagcccatttatggcagaaatttgataacaaggagataatgtgatcattaaacaatgatggaatcattcagaaccttaggaaggtacatttat |
46891001 |
T |
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| Q |
208 |
gcaagacaaggcaaagagacaacaagtaggaggagcaagtttatgtcaaacc |
259 |
Q |
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| T |
46891000 |
gcaagacaaggcaaagggacaacaagtaggaggagcaagtttatgtcaaacc |
46890949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 46873710 - 46873629
Alignment:
| Q |
84 |
tatggcaactaacacaaagtccgccatgccacagcccatttatggcagaaatgtgataacaaggagataatgtgatcattaa |
165 |
Q |
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| T |
46873710 |
tatgccaactagcacaaagtccaccatgccacggcttaattatggaagaaatttgataacaaggagataatgtgatcattaa |
46873629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 48232061 - 48232215
Alignment:
| Q |
8 |
cgaagaatatggcttataaacatggagctgcggcatatggtggaaacaagccgggtataatagtcatggtatagactatggcaactaacacaaagtccgc |
107 |
Q |
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| T |
48232061 |
cgaaaaatctggcttataaacatggagcttctgcatatggtggaa-caagccgggtataatagtcatggta--gactatgcccgctagcacaaagtccgc |
48232157 |
T |
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| Q |
108 |
catgccacagcccatttatggcagaaatgtgataacaaggagataatgtgatcattaa |
165 |
Q |
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|||||||||| |||||| | |||||||| |||||||||||||||||||||||| |||| |
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| T |
48232158 |
catgccacaggccatttttagcagaaatttgataacaaggagataatgtgatcgttaa |
48232215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 48237101 - 48237255
Alignment:
| Q |
8 |
cgaagaatatggcttataaacatggagctgcggcatatggtggaaacaagccgggtataatagtcatggtatagactatggcaactaacacaaagtccgc |
107 |
Q |
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|||| ||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| ||||||| | ||| |||||||||||| |
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| T |
48237101 |
cgaaaaatctggcttataaacatggagcttctgcatatggtggaa-caagccgggtataatagtcatggta--gactatgcccgctagcacaaagtccgc |
48237197 |
T |
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| Q |
108 |
catgccacagcccatttatggcagaaatgtgataacaaggagataatgtgatcattaa |
165 |
Q |
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|||||||||| |||||| | |||||||| |||||||||||||||||||||||| |||| |
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| T |
48237198 |
catgccacaggccatttttagcagaaatttgataacaaggagataatgtgatcgttaa |
48237255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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