View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_10 (Length: 591)
Name: NF16123_high_10
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 275 - 572
Target Start/End: Original strand, 28431503 - 28431800
Alignment:
| Q |
275 |
ggtatggattacattgcttcaaacaccccaattgttcagtttgaacgagagaaagtggattagaactgttgattatgggtagacactaaatcccggattc |
374 |
Q |
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| T |
28431503 |
ggtatggattacattgcttcaaacaccccaattgttcagtttgaacgagagaaagtggattagaactgttgattatgggtagacactaaatcccggattc |
28431602 |
T |
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| Q |
375 |
gtaattgattgccaacatagttcagaaactcaaatcaaaaccacaaaaactggattctgataaaacctatgccgaggaaagagagagagaatataatcag |
474 |
Q |
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| T |
28431603 |
gtaattgattgccaacatagttctgaaactcaaatcaaaaccacaaaaacttgattctgataaaacctatgccgaggaaagagagagagaatataatcag |
28431702 |
T |
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| Q |
475 |
aaaatgattttctgaattgattgatttgcatcatagttcagtattagtatctatttgtacatcgtgtggttgcctctctgtgactctgatacagttat |
572 |
Q |
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| T |
28431703 |
aaaatgattttctgaattgattgatttgcatcatagttcagtattattatctatttgtacatcgtgtggttgcctctctgtgactctgatacagttat |
28431800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 28431245 - 28431442
Alignment:
| Q |
17 |
cataggcattggcaatgcatcaaatgaagctactaaatttatatttagaaactctatttattgttttttgggttttattcaggtgaaatggctaaacaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28431245 |
cataggcattggcaatgcatcaaatgaagctactaaatttatatttagaaactctatttattgttttttgggttttattcaggtgaaatggctaaacaag |
28431344 |
T |
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| Q |
117 |
cagctctccaaattgtggccatttgtggcagatgtgagtaaacttatttgtataataatctagagcagtctgtgtgatgtttattgatttcttactag |
214 |
Q |
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| T |
28431345 |
cagctctccaaattgtggccatttgtggcagatgtgagtaaacttatttgtataataatctagagcagtctgtgtgatgtttattgatttcttactag |
28431442 |
T |
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