View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_high_12 (Length: 507)

Name: NF16123_high_12
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_high_12
NF16123_high_12
[»] chr8 (19 HSPs)
chr8 (10-487)||(22898676-22899153)
chr8 (57-487)||(24872473-24872903)
chr8 (36-487)||(25716907-25717358)
chr8 (56-459)||(25393034-25393437)
chr8 (104-487)||(25324370-25324753)
chr8 (104-487)||(25806963-25807346)
chr8 (36-459)||(25454724-25455147)
chr8 (195-487)||(25606351-25606643)
chr8 (104-487)||(25653018-25653401)
chr8 (36-459)||(25342722-25343145)
chr8 (57-459)||(23259937-23260339)
chr8 (230-487)||(25571600-25571857)
chr8 (36-294)||(25697267-25697525)
chr8 (116-304)||(25477570-25477758)
chr8 (396-459)||(25697105-25697168)
chr8 (428-487)||(25312713-25312772)
chr8 (36-84)||(25324775-25324823)
chr8 (36-84)||(25606754-25606802)
chr8 (36-84)||(25653421-25653469)
[»] scaffold0070 (3 HSPs)
scaffold0070 (57-487)||(14957-15387)
scaffold0070 (36-487)||(34979-35430)
scaffold0070 (116-459)||(48523-48863)
[»] scaffold1415 (1 HSPs)
scaffold1415 (36-459)||(778-1201)
[»] scaffold0830 (1 HSPs)
scaffold0830 (36-477)||(2428-2866)
[»] chr4 (2 HSPs)
chr4 (175-487)||(10325561-10325870)
chr4 (36-151)||(10325894-10326009)


Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 10 - 487
Target Start/End: Original strand, 22898676 - 22899153
Alignment:
10 acatcatcataatcacactccgtatgcattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagc 109  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22898676 acatcatcataatcacactccttatgcattttcaggttcgataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagc 22898775  T
110 ttcagtggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22898776 ttcagtggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacag 22898875  T
210 gatataaccttcctagcctacaatatctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcattggatt 309  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22898876 gatataaccttcctaacctacaatatctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcattggatt 22898975  T
310 tcaattgcattccaatgcatttagtggaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgata 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
22898976 tcaattgcattccaatgcatttagtggaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacaggacaacaacttgata 22899075  T
410 atagaagattctcttcagttctttacttccttgacaaattgtagatatttaaatattcttgacttatcaggaaatcat 487  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
22899076 atagaagattctcttcagttctttacttccttgacgaattgtagatatttaaatattctagacttatcaggaaatcat 22899153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 57 - 487
Target Start/End: Original strand, 24872473 - 24872903
Alignment:
57 aggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaacctcatgaacatgtcatcattgaa 156  Q
    ||||||||||||||||||||||||||||    ||  |||| ||| | |||||||| | ||||||||| ||||||||  || | |||||||||||| |||     
24872473 aggagattggctatcttgataaacttgagcagctactattggcaaacaatagctttactggatctataccttccaaaatcttcaacatgtcatcactgat 24872572  T
157 acaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaatatctacacttgaataacaacaat 256  Q
    |   ||| |  |||| |||||| ||||||| || || ||||||||||| || |||||||||||||||||| | || |||||||| ||| || | ||||||    
24872573 aggcttgtatcttgaacaaaatcacctctccgggataattccatcaaatacgggatataaccttcctagcttgcagtatctacaattggatcataacaat 24872672  T
257 tttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcatttagtggaactctacccaatattgctt 356  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||  |  ||||||||| |||||||||||||||||||||||||    
24872673 tttgttggaaatattccaaatagtatattcaactcttctaatcttattgtatttcaattgagtgacaatgcattcagtggaactctacccaatattgctt 24872772  T
357 ttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagttctttacttccttgacaaattgtagata 456  Q
    |||||| ||||||| |||||||| || ||| || | |   |||||| |||| |||||||||||||| ||| ||||||||||||||||| |||||||||||    
24872773 ttggagatttaaggctcctcaaatcattttacacatatggcaacaatttgacaatagaagattctcatcaattctttacttccttgacgaattgtagata 24872872  T
457 ttt-aaatattcttgacttatcaggaaatcat 487  Q
    ||| ||||| ||||||||||||||| ||||||    
24872873 tttgaaata-tcttgacttatcagggaatcat 24872903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 36 - 487
Target Start/End: Complemental strand, 25717358 - 25716907
Alignment:
36 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaa-aatagcttcagtggatctattccttccaacc 134  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||||  |  ||||| | | | || |||||||| ||||||||||||||||||||      
25717358 cattttcaggtacgattcccgaggagattggctatcttgataaacttgaggtg-ttatacttgtataacaatagcttaagtggatctattccttccaaaa 25717260  T
135 tcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaata 234  Q
    || | ||| |||||||| | |  || |||| | |||| || |||  ||||||||| |   |||||||||| || ||||||| |||||||| ||| |||||    
25717259 tcttcaacttgtcatcactcactcatttgggggttgatcagaatagcctctcaggcacacttccatcaaatacgggatatagccttcctaacctgcaata 25717160  T
235 tctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcatttagt 334  Q
    |||| |||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||||||| |||   ||||||||||||  ||||||||| |||    
25717159 tctatacttgaatcataacaattttgttggaaatattccaaataacatattcaactcttctaatcttattatttttcaattgcatgacaatgcattcagt 25717060  T
335 ggaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagttcttta 434  Q
    |||||||||||||||||||||||||||| |||| | || ||  || |  ||  |||| | |||||||| |||| |||||||||||||| ||| |||||||    
25717059 ggaactctacccaatattgcttttggagatttaggattgcttgaatcgtttcgcatatataacaacaatttgacaatagaagattctcatcaattcttta 25716960  T
435 cttccttgacaaattgtagatatttaaatattcttgacttatcaggaaatcat 487  Q
    ||||||||||||||||||||||||| ||   ||| ||||||||||| ||||||    
25716959 cttccttgacaaattgtagatatttgaagtatctagacttatcagggaatcat 25716907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 56 - 459
Target Start/End: Complemental strand, 25393437 - 25393034
Alignment:
56 aaggagattggctatcttgataaacttgaaattcttatattagcagaa-aatagcttcagtggatctattccttccaacctcatgaacatgtcatcattg 154  Q
    |||||||||||||||||||||||| ||||  |  ||||| | ||  || |||||||| |||||||||||| |||||||  || | ||| |||||||| |     
25393437 aaggagattggctatcttgataaatttgaggtg-ttatacttgcctaacaatagcttaagtggatctatttcttccaaaatcttcaacttgtcatcactc 25393339  T
155 aaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaatatctacacttgaataacaaca 254  Q
    |   | |||||| |||| |  |||  ||||||||| |  ||||||||||| || ||||||| ||||||||| || ||||||||| |||||||| | ||||    
25393338 actgatttggaggttgatctgaatagcctctcaggcacaattccatcaaatacgggatatagccttcctagtctgcaatatctatacttgaatgataaca 25393239  T
255 attttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcatttagtggaactctacccaatattgc 354  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||| ||  ||||||||| ||||||||||||||||||| |||    
25393238 attttgttggaaatattccaaataacatattcaactcttctaatcttattgaatttcaattggatgacaatgcattcagtggaactctacccaatactgc 25393139  T
355 ttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagttctttacttccttgacaaattgtaga 454  Q
    |||||||| |||||| |||||  || |  | |||||| |  ||||||| |||| ||| |||||||||| ||| |||||||||||||||||||||||||||    
25393138 ttttggagatttaagattccttgaatcgctattcatatatgacaacaatttgacaattgaagattctcatcaattctttacttccttgacaaattgtaga 25393039  T
455 tattt 459  Q
    |||||    
25393038 tattt 25393034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 104 - 487
Target Start/End: Complemental strand, 25324753 - 25324370
Alignment:
104 aatagcttcagtggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaa 203  Q
    |||||||| ||||||||||||||||||||  || | |||||||||||| | | | | ||| |   ||| |||||| ||||||| || || ||||| ||||    
25324753 aatagcttaagtggatctattccttccaaaatcttcaacatgtcatcacttacatatttgtatcctgaccaaaatcacctctctgggataattccttcaa 25324654  T
204 aaacaggatataaccttcctagcctacaatatctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcat 303  Q
    | || ||||||| |||||||| ||| |||||||||  ||||||| | |||||||||||||||||||||||||||| ||||||||| | ||||||||| ||    
25324653 atacgggatatagccttcctaacctgcaatatctattcttgaatgataacaattttgttggaaatattccaaataacatattcaactgttctaatcttat 25324554  T
304 tggatttcaattgcattccaatgcatttagtggaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaac 403  Q
    |  |||||||||| ||  ||||||||| | ||||||||||||||||| ||||||||||| |||| | || || ||| |  || ||||| |  |||||||     
25324553 tcaatttcaattgaatggcaatgcattcactggaactctacccaatactgcttttggagatttaggattgcttaaatcgtttctcatagatgacaacaat 25324454  T
404 ttgataatagaagattctcttcagttctttacttccttgacaaattgtagatattt-aaatattcttgacttatcaggaaatcat 487  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||| || ||||||    
25324453 ttgacaatagaagattctcatcaattctttacttccttgacaaattgtagatatttgaaata-tctagacttatccgggaatcat 25324370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 104 - 487
Target Start/End: Complemental strand, 25807346 - 25806963
Alignment:
104 aatagcttcagtggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaa 203  Q
    |||||||| ||||||||||||||||||||  || | ||| |||||||| | | ||| |||||| ||||  | |||  ||||||||| |  ||||||||||    
25807346 aatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcacacatttggaggttgaaaataatagcctctcaggcacaattccatcaa 25807247  T
204 aaacaggatataaccttcctagcctacaatatctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcat 303  Q
    | || ||||||| ||||||||| || |||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||    
25807246 atacgggatatagccttcctagtctgcaatatctacacttgaatgataacaattttgttggaaatattccaaataacatattcaactcttctaatcttat 25807147  T
304 tggatttcaattgcattccaatgcatttagtggaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaac 403  Q
    ||  ||||||||| ||  ||| ||||| |||||||||||||||| |||||||||||||  |||| | ||| |  ||    || ||||| |  |||||||     
25807146 tgtttttcaattgtatgacaacgcattcagtggaactctacccattattgcttttggaaatttaggattcgttgaattctttctcatatatgacaacaat 25807047  T
404 ttgataatagaagattctcttcagttctttacttccttgacaaattgtagatatttaaatattcttgacttatcaggaaatcat 487  Q
    |||| |||| | ||||||| ||| |||||||||||||||||||||||||||||||| ||   ||| ||||||||||| ||||||    
25807046 ttgacaatatatgattctcatcaattctttacttccttgacaaattgtagatatttgaagtatctagacttatcagggaatcat 25806963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 36 - 459
Target Start/End: Complemental strand, 25455147 - 25454724
Alignment:
36 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaacct 135  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||||  | ||  | || | ||| ||||| || ||||||||||||||||||||  |    
25455147 cattttcaggtacgattcccgaggagattggctatcttgataaacttgagctgctagttttgggagacaataggttaagtggatctattccttccaaaat 25455048  T
136 catgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaatat 235  Q
    | | ||| |||||||| | |     |||| | ||||  | |||  ||||||||| |  ||||||||||| || ||||||| ||||||||| || ||||||    
25455047 cttcaacttgtcatcactcactgctttggtggttgaaaataatagcctctcaggcacaattccatcaaatacgggatatagccttcctagtctgcaatat 25454948  T
236 ctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcatttagtg 335  Q
    |||  ||||||| | |||||||||||||||||||||| ||||| ||||||||| |||||||| || |||| ||||||||||||||| |||| ||| ||||    
25454947 ctattcttgaatgataacaattttgttggaaatattctaaataacatattcaactcttctaagcttattgtatttcaattgcattcgaatgtattcagtg 25454848  T
336 gaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagttctttac 435  Q
    ||||||||||||||| |||||||| || |||| | || ||  || | |||  ||||   |||||||| |||| |||||||||||||| ||| ||||||||    
25454847 gaactctacccaatactgcttttgaagatttaggattgcttgaatcgattcgcatatctaacaacaatttgacaatagaagattctcatcaattctttac 25454748  T
436 ttccttgacaaattgtagatattt 459  Q
    ||||||||||||||||||||||||    
25454747 ttccttgacaaattgtagatattt 25454724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 195 - 487
Target Start/End: Complemental strand, 25606643 - 25606351
Alignment:
195 ttccatcaaaaacaggatataaccttcctagcctacaatatctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttc 294  Q
    |||||||||| || ||||||| |||||||||  | ||||||||| |||||||| | |||||||||||||||||||||||||||| ||||||||| |||||    
25606643 ttccatcaaatacgggatatagccttcctagtttgcaatatctatacttgaatgaaaacaattttgttggaaatattccaaataacatattcaactcttc 25606544  T
295 taatctcattggatttcaattgcattccaatgcatttagtggaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacag 394  Q
    |||||| ||||  ||||||||| ||  ||| ||||| ||||||||||||||||||||||||||||||  |||||| |||||  ||    || ||||| |     
25606543 taatctgattgattttcaattgtatgacaacgcattcagtggaactctacccaatattgcttttggaaatttaagattccttgaattctttctcatatat 25606444  T
395 aacaacaacttgataatagaagattctcttcagttctttacttccttgacaaattgtagatatttaaatattcttgacttatcaggaaatcat 487  Q
     ||||||| |||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||   ||| ||||||||||| ||||||    
25606443 gacaacaatttgacaatagatgattctcatcaattctttacttccttgacaaattgtagatatttgaagtatctagacttatcaggtaatcat 25606351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 104 - 487
Target Start/End: Complemental strand, 25653401 - 25653018
Alignment:
104 aatagcttcagtggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaa 203  Q
    |||||||| ||||||||||||||||||||  || | |||||||||||| | |   | || ||| |||| || |||  ||||||||| |  ||||||||||    
25653401 aatagcttaagtggatctattccttccaaaatcttcaacatgtcatcactcattgatttcgaggttgatcagaatagcctctcaggcacaattccatcaa 25653302  T
204 aaacaggatataaccttcctagcctacaatatctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcat 303  Q
    | || ||||||| ||||||||  || |||||| ||| ||||||| | ||||||||||||||||||||||||||||  |||||||| ||||||||||| ||    
25653301 atacgggatatagccttcctaatctgcaatatttactcttgaatgataacaattttgttggaaatattccaaataatatattcaactcttctaatcttat 25653202  T
304 tggatttcaattgcattccaatgcatttagtggaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaac 403  Q
    ||  ||||||||| |   ||||||||| |||||||||||||||| |||| ||||| ||| |||| | |||||  ||    || ||||| |  |||||||     
25653201 tgagtttcaattgaaagacaatgcattcagtggaactctacccagtatttcttttagagatttaggattccttgaatactttctcatagatgacaacaat 25653102  T
404 ttgataatagaagattctcttcagttctttacttccttgacaaattgtagatattt-aaatattcttgacttatcaggaaatcat 487  Q
    |||| |||||||||||||| ||| ||||||||||| |||||||||||||||||||| | ||| ||||||||||||||| ||||||    
25653101 ttgacaatagaagattctcatcaattctttacttcattgacaaattgtagatatttgacata-tcttgacttatcaggtaatcat 25653018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 36 - 459
Target Start/End: Complemental strand, 25343145 - 25342722
Alignment:
36 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaacct 135  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||||    ||  | ||  |  | |||||||| ||||||||||||||||||||  |    
25343145 cattttcaggtacgattcccgaggagattggctatcttgataaacttgagcgactattcttgtctaacaatagcttaagtggatctattccttccaaaat 25343046  T
136 catgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaatat 235  Q
    | | ||| |||||||| | |   | |||||| ||||  | |||  ||||||||| |  ||||||||||| || ||||||| |||||||||||| ||| ||    
25343045 cttcaacttgtcatcactcacttatttggaggttgaagagaatagcctctcaggcacaattccatcaaatacgggatatagccttcctagcctgcaacat 25342946  T
236 ctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcatttagtg 335  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| |||   |||||||||  |  ||| | ||| ||||    
25342945 ctacacttgaataataacaattttgttggaaatattccaaataacatattcaactcttctaatcttattcattttcaattgactgacaacgaattcagtg 25342846  T
336 gaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagttctttac 435  Q
    ||||| ||||||||| ||||||||||| |||| | || ||  || |  ||  |||| | | |||||| |||| ||| |||||||||| ||| ||||||||    
25342845 gaactttacccaatactgcttttggagatttaggattgcttgaatcgtttaacatagataccaacaatttgacaattgaagattctcatcaattctttac 25342746  T
436 ttccttgacaaattgtagatattt 459  Q
    ||||||||||||||||||||||||    
25342745 ttccttgacaaattgtagatattt 25342722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 57 - 459
Target Start/End: Complemental strand, 23260339 - 23259937
Alignment:
57 aggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaacctcatgaacatgtcatcattgaa 156  Q
    |||||||||| |||||||||||||||||| |||| || || | | | |||||||| |||||||| |||||||| || ||| | |||||||||||| |||     
23260339 aggagattggttatcttgataaacttgaatttctaatcttggaaaacaatagcttgagtggatccattccttctaaactcctcaacatgtcatcactgac 23260240  T
157 acaattggagt-ttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaatatctacacttgaataacaacaa 255  Q
    |   ||| ||| |||  | ||||||||||||||| || ||||| || || |  ||||||||||||||||  || ||||| |||||||||||| | ||||     
23260239 attcttg-agtcttgccctaaattacctctcaggcatgattccgtcgaataatggatataaccttcctatgctgcaatacctacacttgaatcataacag 23260141  T
256 ttttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcatttagtggaactctacccaatattgct 355  Q
    ||||||||| ||| |||||||||| |||||||| ||||| |||||||||| ||||||||||  |  |||  |||| || |||||||| ||||||||||||    
23260140 ttttgttggcaatgttccaaatagtatattcaactcttccaatctcattgaatttcaattgagtgacaacacattcagcggaactctgcccaatattgct 23260041  T
356 tttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagttctttacttccttgacaaattgtagat 455  Q
    || |||| |||||||||||||| |||| || ||||| | |||||  | || | |||||| ||||||||||| ||||||||||| |||  |||||| |||     
23260040 ttcggagatttaaggttcctcagaacacttatcataaataacaatgattttacaatagatgattctcttcaattctttacttctttgggaaattgcagac 23259941  T
456 attt 459  Q
    ||||    
23259940 attt 23259937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 230 - 487
Target Start/End: Complemental strand, 25571857 - 25571600
Alignment:
230 caatatctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcat 329  Q
    ||||||||||||||| || | ||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||  ||||||||||  |  ||||||||    
25571857 caatatctacacttggatcataacaattttgttggaaatattccaagtagtatattcaactcttctaatcttattcaatttcaattgagtgtcaatgcat 25571758  T
330 ttagtggaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagtt 429  Q
    | |||||||||||||||||||||| |||||||| ||||   || ||  ||    ||  |||| | |||||||| |||| ||| |||||||||| ||| ||    
25571757 tcagtggaactctacccaatattgattttggagatttagtattgcttgaattgtttcacatatataacaacaatttgacaatcgaagattctcatcaatt 25571658  T
430 ctttacttccttgacaaattgtagatattt-aaatattcttgacttatcaggaaatcat 487  Q
    ||||||||||||||||||||||||  |||| ||||| ||| ||||||||||| ||||||    
25571657 ctttacttccttgacaaattgtaggcatttgaaata-tctagacttatcagggaatcat 25571600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 294
Target Start/End: Complemental strand, 25697525 - 25697267
Alignment:
36 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaacct 135  Q
    ||||||||||| | || || ||||||||||| |||||||||||||||||  | ||   |||  |  | |||||||| ||||||||||||||||||||  |    
25697525 cattttcaggtacgattcccaaggagattggttatcttgataaacttgaggtgctatcattgtctaacaatagcttaagtggatctattccttccaaaat 25697426  T
136 catgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaatat 235  Q
    | | ||| |||||||| | | | | |||||| |||| |  |||  ||||||| | |  ||||||||||| || ||||||| |||||||| ||| ||||||    
25697425 cttcaacttgtcatcactcacatatttggaggttgatcgtaatagcctctcaagcacaattccatcaaatacgggatatagccttcctaacctgcaatat 25697326  T
236 ctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttc 294  Q
    ||||||||| || | ||||||||||||||||||||||||||||  |||||||| |||||    
25697325 ctacacttgtatcaaaacaattttgttggaaatattccaaataatatattcaactcttc 25697267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 116 - 304
Target Start/End: Complemental strand, 25477758 - 25477570
Alignment:
116 ggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatata 215  Q
    ||||| ||||||||||| ||| | ||||| |||||| ||| | | ||| |  |||| ||||||||||||||||| || ||||||||||||||||| ||||    
25477758 ggatcaattccttccaaactcctcaacatatcatcactgacatacttgcatcttgaacaaaattacctctcaggcataattccatcaaaaacaggttata 25477659  T
216 accttcctagcctacaatatctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcatt 304  Q
     ||||||||  |||||| | ||    ||| || | ||||||||||||||||||||||||||||  ||||||||  ||||| ||||||||    
25477658 gccttcctaagctacaacaactttcgttgtatcaaaacaattttgttggaaatattccaaatattatattcaacgcttctgatctcatt 25477570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 396 - 459
Target Start/End: Complemental strand, 25697168 - 25697105
Alignment:
396 acaacaacttgataatagaagattctcttcagttctttacttccttgacaaattgtagatattt 459  Q
    ||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||    
25697168 acaacaatttgacaatagaagattctcatcaattctttacttccttgacaaattgtagatattt 25697105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 487
Target Start/End: Complemental strand, 25312772 - 25312713
Alignment:
428 ttctttacttccttgacaaattgtagatatttaaatattcttgacttatcaggaaatcat 487  Q
    |||||||||||||||||||||||||||||||| ||   ||| ||||||||||| ||||||    
25312772 ttctttacttccttgacaaattgtagatatttgaagtatctagacttatcaggtaatcat 25312713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 25324823 - 25324775
Alignment:
36 cattttcaggttcaataccaaaggagattggctatcttgataaacttga 84  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||||    
25324823 cattttcaggtacgattcccgaggagattggctatcttgataaacttga 25324775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 25606802 - 25606754
Alignment:
36 cattttcaggttcaataccaaaggagattggctatcttgataaacttga 84  Q
    ||||||||||| | || || ||||||||||| |||||||||||||||||    
25606802 cattttcaggtacgattcccaaggagattggttatcttgataaacttga 25606754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 25653469 - 25653421
Alignment:
36 cattttcaggttcaataccaaaggagattggctatcttgataaacttga 84  Q
    ||||||||||| | |||||  |||||||||||||||||||| |||||||    
25653469 cattttcaggtacgatacccgaggagattggctatcttgatcaacttga 25653421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 57 - 487
Target Start/End: Original strand, 14957 - 15387
Alignment:
57 aggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaacctcatgaacatgtcatcattgaa 156  Q
    ||||||||||||||||||||||||||||  | ||  ||||  |  | |||||||| ||||||||||||||||||||  || | ||| |||||||  | |     
14957 aggagattggctatcttgataaacttgagctgctattattgtctaacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcgctcac 15056  T
157 acaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaatatctacacttgaataacaacaat 256  Q
      | |||||| |||| || |||   |||||||| |  ||||||||||| || ||||||| ||||||||| || |||||||||  |||| || | ||||||    
15057 taatttggaggttgatcagaatagtctctcaggcacaattccatcaaatacgggatatagccttcctagtctgcaatatctattcttggatcataacaat 15156  T
257 tttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcatttagtggaactctacccaatattgctt 356  Q
    |||||||||||||||||||||| ||||||||| ||||||||  | ||||  ||||||||| |||| |||||||| ||||||||||||||||||| || ||    
15157 tttgttggaaatattccaaataacatattcaactcttctaagttaattgattttcaattggattcgaatgcattcagtggaactctacccaatactggtt 15256  T
357 ttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagttctttacttccttgacaaattgtagata 456  Q
    || ||| |||| ||| |||  ||    |||| ||| |  ||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||||||||    
15257 ttagagatttatggtcccttgaagtgtttttaatatatgacaacaaattgacaatagaagattctcatcaattctttacttccttgacaaattgtagata 15356  T
457 ttt-aaatattcttgacttatcaggaaatcat 487  Q
    ||| ||||| ||||||||||||||| ||||||    
15357 tttgaaata-tcttgacttatcagggaatcat 15387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 36 - 487
Target Start/End: Original strand, 34979 - 35430
Alignment:
36 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaacct 135  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||||  | ||  ||||  |  | |||||||| ||||||||||||||||| ||  |    
34979 cattttcaggtacgattcccgaggagattggctatcttgataaacttgaggtgctattattgtctaacaatagcttaagtggatctattccttctaaaat 35078  T
136 catgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaatat 235  Q
    | | ||| |||||||| | |     |||| | |||| || |||  ||||||||| |   |||||||||| || ||||||| ||||||||  || ||||||    
35079 cttcaacttgtcatcactcactgctttggtggttgatcataatagcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatat 35178  T
236 ctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcatttagtg 335  Q
    |||||||||  | | |||||||||||||||||||||||||||| |||||| || |||||||| |||  |  | |   |||| |  | |||||||| ||||    
35179 ctacacttgtttcaaaacaattttgttggaaatattccaaataacatattaaactcttctaagctccgtcaaatcgcattggaaacaaatgcattcagtg 35278  T
336 gaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagttctttac 435  Q
    ||||||||||||||| | ||||||||| |||||| |||||  ||    |||||| | | ||||| || |||| |||||||||||||| ||| ||||||||    
35279 gaactctacccaatactacttttggagatttaagattccttgaattgtttttcacatataacaataaattgacaatagaagattctcatcaattctttac 35378  T
436 ttccttgacaaattgtagatattt-aaatattcttgacttatcaggaaatcat 487  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||    
35379 ttccttgacaaattgtagatatttgaaata-tcttgacttatcaggtaatcat 35430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 459
Target Start/End: Original strand, 48523 - 48863
Alignment:
116 ggatctattccttccaacctcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatata 215  Q
    ||||| ||||| ||||| ||| | ||||| |||||| ||| | | |||||  |||  ||||||||||||||||| || ||||||||||||||||| ||||    
48523 ggatcaattccatccaaactcctcaacatatcatcactgacatacttggatcttgtacaaaattacctctcaggcataattccatcaaaaacaggttata 48622  T
216 accttcctagcctacaatatctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaatt 315  Q
     ||||||||  |||||||||||| ||||| |    ||||||||||||||||||||||||||||  ||||||||  ||||| | ||||||  | || | ||    
48623 gccttcctaagctacaatatctagacttggaaggaaacaattttgttggaaatattccaaatattatattcaacgcttctcacctcattctagttgactt 48722  T
316 gcattccaatgcatttagtggaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaa 415  Q
    | ||  ||| ||||| | ||||||| | || ||| |   ||||| |  |||||||||| |||||    |||||| |  | ||||| | |||| ||||||     
48723 gaatcacaacgcattcactggaactgttcctaattt---ttttgaaaatttaaggttcttcaaatattttttcacagggtacaactatttgacaatagat 48819  T
416 gattctcttcagttctttacttccttgacaaattgtagatattt 459  Q
    ||||| | ||||||||||| ||||||||||| ||||||||||||    
48820 gattcacatcagttctttaattccttgacaagttgtagatattt 48863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1415 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold1415
Description:

Target: scaffold1415; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 36 - 459
Target Start/End: Complemental strand, 1201 - 778
Alignment:
36 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaa-aatagcttcagtggatctattccttccaacc 134  Q
    ||||||||||| | || ||  ||||||||||||||||||||||||||||  |  ||||| | | | || |||||||| ||||||||||||||||||||      
1201 cattttcaggtacgattcccgaggagattggctatcttgataaacttgagctg-ttatacttgtataacaatagcttaagtggatctattccttccaaaa 1103  T
135 tcatgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaata 234  Q
    || | ||| |||||||| | |   | |||||| || | || |||  ||||||||| |   |||||||||| || ||||||| |||||||| ||| ||  |    
1102 tcttcaacttgtcatcactcactgatttggaggttaatcagaatagcctctcaggcacacttccatcaaatacgggatatagccttcctaacctgcataa 1003  T
235 tctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcatttagt 334  Q
    |||||||||| || | |||||||||||||||||||||||||||| ||||||||| |||||||| || |||| |||||||||| ||  ||| | ||| |||    
1002 tctacacttgtatcaaaacaattttgttggaaatattccaaataacatattcaactcttctaagcttattgtatttcaattggatgacaacgaattcagt 903  T
335 ggaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagttcttta 434  Q
    |||||| ||||||||| ||||||||||| |||| | || ||  || |  ||  |||| | | |||||| |||| ||| |||||||||| ||| |||||||    
902 ggaactttacccaatactgcttttggagatttaggattgcttgaatcttttaacatagataccaacaatttgacaattgaagattctcatcaattcttta 803  T
435 cttccttgacaaattgtagatattt 459  Q
    |||||||||||||||||||||||||    
802 cttccttgacaaattgtagatattt 778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0830 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 36 - 477
Target Start/End: Original strand, 2428 - 2866
Alignment:
36 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaaaatagcttcagtggatctattccttccaacct 135  Q
    ||||||||||||| |||||  ||||||||| ||||||||||||||||||  |||| |||||  | |  |||| ||| |||||| |||||| ||||||  |    
2428 cattttcaggttctatacctgaggagattgtctatcttgataaacttgagcttctaatattgtctgttaataacttaagtggaactattcattccaaaat 2527  T
136 catgaacatgtcatcattgaaacaattggagtttgagcaaaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaatat 235  Q
    | | ||||||||||| || | ||| |||||| |||| | ||||   |||||||| |  || |||||||| || ||||    |||||||| ||| ||| |     
2528 cttcaacatgtcatcgttaacacatttggagcttgaacgaaatagtctctcaggcacaatcccatcaaatacgggatt---ccttcctaacctgcaaaaa 2624  T
236 ctacacttgaataacaacaattttgttggaaatattccaaatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcatttagtg 335  Q
    |||||||||||| | ||||| ||||||||||||||||||||||| || ||||| |||||||||||| ||| |||| ||  |  |  ||||| ||||||||    
2625 ctacacttgaatcataacaaatttgttggaaatattccaaatagtattttcaactcttctaatctcgttgaatttgaagcggttgacaatgaatttagtg 2724  T
336 gaactctacccaatattgcttttggaggtttaaggttcctcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagttctttac 435  Q
    ||||||||||||||| ||||||| |   ||||||||| ||| |  |  || |||||     |||||| |||| ||| || ||| ||||||| ||||||||    
2725 gaactctacccaataatgcttttcggaatttaaggttgctcgattcgtttatcataagtttcaacaatttgacaatcgacgatcctcttcaattctttac 2824  T
436 ttccttgacaaattgtagatatttaaatattcttgacttatc 477  Q
    |||||||||||||||||||||||| || ||||| ||| ||||    
2825 ttccttgacaaattgtagatatttgaaaattctagacatatc 2866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 175 - 487
Target Start/End: Complemental strand, 10325870 - 10325561
Alignment:
175 aaattacctctcaggaattattccatcaaaaacaggatataaccttcctagcctacaatatctacacttgaataacaacaattttgttggaaatattcca 274  Q
    |||| |||||||  |||| ||||||||||| |  ||||||| |||||||||||||||||||||||| ||| ||   |||||||||  |||||||||||||    
10325870 aaatcacctctctcgaataattccatcaaatatgggatatagccttcctagcctacaatatctacatttgtatggtaacaattttactggaaatattcca 10325771  T
275 aatagcatattcaattcttctaatctcattggatttcaattgcattccaatgcatttagtggaactctacccaatattgcttttggaggtttaaggttcc 374  Q
    ||||| |||||||| ||||||||||| |||| ||||| ||||  |   |||||||| |||||||||||||||||| |||   |||||  |||||||||||    
10325770 aatagtatattcaactcttctaatcttattgaatttcgattgggtggtaatgcattcagtggaactctacccaattttg---ttggaaatttaaggttcc 10325674  T
375 tcaaaacaattttcatacagaacaacaacttgataatagaagattctcttcagttctttacttccttgacaaattgtagatatttaaatattcttgactt 474  Q
    |||||| | ||  || |    ||||||| || | ||| |||||||||| ||| ||||||||||||||| ||||||||||| |||| ||  |||| |||||    
10325673 tcaaaatatttgacacatttcacaacaatttcacaattgaagattctcatcaattctttacttccttgtcaaattgtagaaatttgaaatttctagactt 10325574  T
475 atcaggaaatcat 487  Q
    |||| | ||||||    
10325573 atcaaggaatcat 10325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 10326009 - 10325894
Alignment:
36 cattttcaggttcaataccaaaggagattggctatcttgataaacttgaaattcttatattagcagaa-aatagcttcagtggatctattccttccaacc 134  Q
    ||||| ||||||| ||||   ||||||||||||||||||||||||||||  | ||  |||| ||| || |||||||| |||||| | |||||||||||      
10326009 catttccaggttcgatacttgaggagattggctatcttgataaacttgagttgctagtatt-gcataacaatagctttagtggagccattccttccaaaa 10325911  T
135 tcatgaacatgtcatca 151  Q
    || | ||||||||||||    
10325910 tctttaacatgtcatca 10325894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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