View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_2 (Length: 767)
Name: NF16123_high_2
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 141 - 758
Target Start/End: Complemental strand, 5218171 - 5217542
Alignment:
| Q |
141 |
gtggcacatagttcctgtgaacgtaaatatacatcttctgtttaatttcatataattgaattagttacttcatatgattaaaacaatagagaaacacacc |
240 |
Q |
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|||||||||||||||| ||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || | |
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| T |
5218171 |
gtggcacatagttcctatgaacataaataca-----tctatttaatttcatataattgaattagttacttcatatgattgaaacaattgagaaacgcatc |
5218077 |
T |
|
| Q |
241 |
aaacacgaaatcgacaccgaaatgacacattaaaactgataattatctgagaaaataatataattaactataataa------------------tatgac |
322 |
Q |
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|||| | ||| ||| ||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||| | |||||| |
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| T |
5218076 |
gaacataacatcaacatcgaaatgacacattaaaaccaataattatttgaaaaaataatataattaactgtaatgacatatgtcagtatcaatgtatgac |
5217977 |
T |
|
| Q |
323 |
acggacgcacattg-acactagatacacattcaatcaaaaagtatggtacaaaatattttatgataggaagagacnnnnnnnnccttctcaatttggtgc |
421 |
Q |
| |
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|||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
5217976 |
acggacacacattggacactagatatacattcaat-aaaaagtatggtacaaaatattttacgataggaagagacaaaaaaa-ccttctcaatttggtgc |
5217879 |
T |
|
| Q |
422 |
atgaggttcctgtcagtaagcttcttgccagcttgatccgtgacgtggaacactgcattgtgtaacaaaaagagacacgcaccacacaacttgtatcaga |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5217878 |
atgaggttcctgtcagtaagcttcttgccagcttgatccgtgacgtggaacactgcattgtgtaacaaaaagagacacgcaccacacaacttgtatcaga |
5217779 |
T |
|
| Q |
522 |
accgaaccactaaaattttgctgatatcatatgataatgtggtagtcataataataggtcaaaaaacaagataaaagtaagcnnnnnnnnaatgataaat |
621 |
Q |
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| T |
5217778 |
accgaaccactaaaattttgctgatatcatatgataatgtggtagtcataataataggtccaaaaacaagataaaagtaagctttttttaaatgataaat |
5217679 |
T |
|
| Q |
622 |
tgctcaattatcattatcatggtttatggaaaaatacaggtaaacaatgttaaaggaattccactctaagaaggagaaacactgaccgtccataaaccat |
721 |
Q |
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| T |
5217678 |
tgctcaattatcattatcatggtttatggaaaaatacaggtaaacaatgttaaaggaattccactctaagaaggataaacactgaccgtccataaaccat |
5217579 |
T |
|
| Q |
722 |
ccaccatctgaggaaatgtatgacttggaaatgatga |
758 |
Q |
| |
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| T |
5217578 |
ccaccatctgaggaaatgtatgacttggaaatgatga |
5217542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 5218569 - 5218285
Alignment:
| Q |
19 |
tatccatcccactcatctccaatgctgtgttctccgttgacacaatttgttttgagtattttgactgtgaatattctgcgcagccttggagttcttcatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5218569 |
tatccatcccactcatctccaatgctgtgttctccgttgacacaatttgttttgagtattttgactgtgaatattctgcgcagccttggagttcttcatc |
5218470 |
T |
|
| Q |
119 |
atctatgtcctcttttgctcttgtggcacatagttcctgtgaacgtaaatatacatcttctgtttaatttcatataattgaattagttacttcatatgat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5218469 |
atctatgtcctcttttgctcttgtggcacatagttcctgtgaaagtaaatatacatcttctgtttaatttcatataattgaattagttacttcatatgat |
5218370 |
T |
|
| Q |
219 |
taaaacaatagagaaacacaccaaacacgaaatcgacaccgaaatgacacattaaaactgataattatctgagaaaataatataa |
303 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
5218369 |
taaaacaatagagaaacacaccaaacacgaaatcaacaccgaaatgacacattaaaaccgataattatctgagaaaatgatataa |
5218285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 702 - 753
Target Start/End: Original strand, 40128066 - 40128117
Alignment:
| Q |
702 |
actgaccgtccataaaccatccaccatctgaggaaatgtatgacttggaaat |
753 |
Q |
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| T |
40128066 |
actgaccatccattaaccatccaccatcagaagaaatgtatgatttggaaat |
40128117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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