View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_high_21 (Length: 436)

Name: NF16123_high_21
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_high_21
NF16123_high_21
[»] chr8 (19 HSPs)
chr8 (15-426)||(29591931-29592344)
chr8 (174-370)||(29592358-29592556)
chr8 (115-166)||(9912809-9912860)
chr8 (111-166)||(34770887-34770942)
chr8 (110-230)||(4763912-4764032)
chr8 (146-230)||(9700055-9700139)
chr8 (15-75)||(29592643-29592703)
chr8 (109-152)||(6509337-6509380)
chr8 (171-230)||(20186396-20186455)
chr8 (171-230)||(20205463-20205522)
chr8 (109-155)||(4558791-4558837)
chr8 (109-155)||(8062322-8062368)
chr8 (116-158)||(11494310-11494352)
chr8 (102-140)||(29592578-29592616)
chr8 (102-140)||(30013204-30013242)
chr8 (122-166)||(2107349-2107393)
chr8 (109-153)||(10075584-10075628)
chr8 (146-210)||(14949920-14949984)
chr8 (109-153)||(31862486-31862530)
[»] chr4 (8 HSPs)
chr4 (123-242)||(7730631-7730749)
chr4 (109-166)||(8147885-8147942)
chr4 (123-162)||(11262787-11262826)
chr4 (109-155)||(42866061-42866107)
chr4 (112-153)||(29601041-29601082)
chr4 (146-230)||(7367986-7368070)
chr4 (111-155)||(12650315-12650359)
chr4 (190-230)||(18512447-18512487)
[»] chr6 (9 HSPs)
chr6 (111-165)||(3525143-3525197)
chr6 (188-230)||(10016719-10016761)
chr6 (108-166)||(9041456-9041514)
chr6 (125-230)||(27857391-27857496)
chr6 (123-166)||(13907425-13907468)
chr6 (109-155)||(281879-281925)
chr6 (109-155)||(1401102-1401148)
chr6 (116-153)||(6647387-6647424)
chr6 (109-153)||(4006707-4006751)
[»] chr7 (9 HSPs)
chr7 (109-165)||(28340865-28340921)
chr7 (109-149)||(21453287-21453327)
chr7 (109-160)||(27517307-27517358)
chr7 (171-230)||(44289975-44290034)
chr7 (188-230)||(529458-529500)
chr7 (109-155)||(38010707-38010753)
chr7 (109-145)||(5369732-5369768)
chr7 (111-155)||(46056041-46056085)
chr7 (109-153)||(47941316-47941360)
[»] chr5 (6 HSPs)
chr5 (122-166)||(38047875-38047919)
chr5 (123-155)||(40534206-40534238)
chr5 (109-155)||(15003545-15003591)
chr5 (109-139)||(39105457-39105487)
chr5 (186-230)||(9174910-9174954)
chr5 (111-155)||(29201528-29201572)
[»] chr2 (9 HSPs)
chr2 (109-155)||(43205302-43205348)
chr2 (194-230)||(18525173-18525209)
chr2 (125-228)||(1318269-1318371)
chr2 (115-153)||(10884554-10884592)
chr2 (109-155)||(22681216-22681262)
chr2 (112-153)||(9556235-9556276)
chr2 (109-166)||(28803526-28803583)
chr2 (113-153)||(13736326-13736366)
chr2 (146-230)||(29430812-29430896)
[»] chr3 (6 HSPs)
chr3 (109-166)||(21872291-21872348)
chr3 (111-153)||(25964438-25964480)
chr3 (109-155)||(38462274-38462320)
chr3 (109-154)||(24887315-24887360)
chr3 (146-230)||(2304203-2304287)
chr3 (109-165)||(34760934-34760990)
[»] chr1 (10 HSPs)
chr1 (117-242)||(2035351-2035476)
chr1 (191-230)||(43420357-43420396)
chr1 (109-155)||(6279392-6279438)
chr1 (109-155)||(27738211-27738257)
chr1 (188-230)||(29793630-29793672)
chr1 (184-230)||(52013979-52014025)
chr1 (102-155)||(11997057-11997110)
chr1 (123-160)||(15784828-15784865)
chr1 (109-153)||(25479574-25479618)
chr1 (123-155)||(50319277-50319309)
[»] scaffold0110 (1 HSPs)
scaffold0110 (109-166)||(35815-35871)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Complemental strand, 29592344 - 29591931
Alignment:
Q  15 agttatgaatgtatagcttaagttcttatcatattagtgcttctgcataagctatttttacaacnnnnnnnnnnnnnnnnnnnnnnngtttccttataag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       |||||||||||||    
T  29592344 agttatgaatgtatagcttaagttcttatcatattagtgcttctgcataagctatttttacaacaaaatataaaataaaataaaatagtttccttataag 29592245  T
Q  115 ctataatctgttttcataagctatcccagagagcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatgcctgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29592244 ctataatctgttttcataagctatcccagagagcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatgcctgt 29592145  T
Q  215 agataagctcaaataattcgacccaaacttaatggcttaaagagtatcaatcagtaaataattgaaaa--ttgtggtattttttcaaggccatgaagtac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  29592144 agataagctcaaataattcgacccaaacttaatggcttaaagagtatcaatcagtaaataattgaaaattttgtggtattttttcaaggccatgaagtac 29592045  T
Q  313 tttaccaaaaggtaaaattttggcaggcagcttatgtaatattgtagcttttctgtttagtttctcggtatcgtttcgaaaggaagaactgcaattactt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29592044 tttaccaaaaggtaaaattttggcaggcagcttatgtaatattgtagcttttctgtttagtttctcggtattgtttcgaaaggaagaactgcaattactt 29591945  T
Q  413 cgttatttgttcat 426  Q
    ||||||||||||||    
T  29591944 cgttatttgttcat 29591931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 174 - 370
Target Start/End: Complemental strand, 29592556 - 29592358
Alignment:
Q  174 cataatctcccctgaatagtctcacgagtgtttatgcctgtagataagctcaaataattcgacccaaacttaatggcttaaagagtatcaatcagtaaat 273  Q
    |||||| || || |||||||||||| ||||||| |||   |||| |||||||||||| || | ||||||||||||| ||||||| ||||| |   ||| |    
T  29592556 cataatttctcccgaatagtctcacaagtgtttgtgcaaatagacaagctcaaataagtcaatccaaacttaatggtttaaagactatcagtatttaatt 29592457  T
Q  274 aattgaaaa--ttgtggtattttttcaaggccatgaagtactttaccaaaaggtaaaattttggcaggcagcttatgtaatattgtagcttttctgttt 370  Q
    |||||||||  ||||||||||||| |||||| ||||||||||||||||||| ||||| || ||||||||| |||||| |||||||||||||||||||||    
T  29592456 aattgaaaaaattgtggtatttttacaaggctatgaagtactttaccaaaacgtaaatttgtggcaggcaacttatggaatattgtagcttttctgttt 29592358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 9912860 - 9912809
Alignment:
Q  115 ctataatctgttttcataagctatcccagagagcttatggacatgtcataag 166  Q
    |||||| |||||||| ||||||||||  ||||||||||||||||||||||||    
T  9912860 ctataagctgttttcctaagctatcctggagagcttatggacatgtcataag 9912809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 34770887 - 34770942
Alignment:
Q  111 taagctataatctgttttcataagctatcccagagagcttatggacatgtcataag 166  Q
    ||||||||||  |||||||||||||||||| |||||| | ||||||||||||||||    
T  34770887 taagctataagttgttttcataagctatcctagagagttcatggacatgtcataag 34770942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 4763912 - 4764032
Alignment:
Q  110 ataagctataatctgttttcataagctatcccagagagcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatg 209  Q
    ||||||||||| |||||||  ||||||||||   |||||||||||||||||||| ||||  ||||| || ||| | | ||||||||||   ||| |||||    
T  4763912 ataagctataagctgtttttctaagctatcctgaagagcttatggacatgtcattagatgttttcaaaagctctcttaaatagtctcataggtgcttatg 4764011  T
Q  210 cctgtagataagctcaaataa 230  Q
    |  || |||||| ||||||||    
T  4764012 ctagtggataagttcaaataa 4764032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 9700055 - 9700139
Alignment:
Q  146 agcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    ||||||||||||||||||||  |  ||||| || ||| |   ||||||||||| |||||||||||  ||||||||||||||||||    
T  9700055 agcttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataa 9700139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 29592703 - 29592643
Alignment:
Q  15 agttatgaatgtatagcttaagttcttatcatattagtgcttctgcataagctatttttac 75  Q
    ||||||| || |||||| |||||||||||||||| ||||||| || |||||||||| ||||    
T  29592703 agttatgcatttatagcataagttcttatcatataagtgcttttgtataagctattcttac 29592643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 6509380 - 6509337
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttat 152  Q
    |||||||||||| |||||||||||||||||||  ||||||||||    
T  6509380 tataagctataagctgttttcataagctatcctggagagcttat 6509337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 20186455 - 20186396
Alignment:
Q  171 tttcataatctcccctgaatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    |||||||| ||| | ||||||||||||| ||||| ||||||  |||||||||||||||||    
T  20186455 tttcataaactctcttgaatagtctcaccagtgtctatgccactagataagctcaaataa 20186396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 20205522 - 20205463
Alignment:
Q  171 tttcataatctcccctgaatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    |||||||| ||| | ||||||||||||| ||||| ||||||  |||||||||||||||||    
T  20205522 tttcataaactctcttgaatagtctcaccagtgtctatgccactagataagctcaaataa 20205463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 4558791 - 4558837
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||| ||||||| |||||| |||||||||||| ||||||||||||||    
T  4558791 tatatgctataagctgtttccataagctatcctagagagcttatgga 4558837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 8062322 - 8062368
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||||||||||| ||||||||||||||||||  |||||| |||||||    
T  8062322 tataagctataagctgttttcataagctatcttagagagattatgga 8062368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 11494310 - 11494352
Alignment:
Q  116 tataatctgttttcataagctatcccagagagcttatggacat 158  Q
    ||||| || |||||||||||||||||||| |||||||||||||    
T  11494310 tataagctattttcataagctatcccagaaagcttatggacat 11494352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 29592616 - 29592578
Alignment:
Q  102 gtttccttataagctataatctgttttcataagctatcc 140  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  29592616 gtttccttataagctataagctgttttcgtaagctatcc 29592578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 30013204 - 30013242
Alignment:
Q  102 gtttccttataagctataatctgttttcataagctatcc 140  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  30013204 gtttccatataagctataagctgttttcataagctatcc 30013242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 2107393 - 2107349
Alignment:
Q  122 ctgttttcataagctatcccagagagcttatggacatgtcataag 166  Q
    ||||||||||||||||||   ||||||||||||||||| ||||||    
T  2107393 ctgttttcataagctatcttggagagcttatggacatgccataag 2107349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 10075628 - 10075584
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatg 153  Q
    |||||| ||||| || |||||||||||||||| ||||||||||||    
T  10075628 tataagttataagctattttcataagctatcctagagagcttatg 10075584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 14949920 - 14949984
Alignment:
Q  146 agcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatgc 210  Q
    ||||||||||||||||||||| |  |||||||| ||| ||| || |||||||| | |||||||||    
T  14949920 agcttatggacatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatgc 14949984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 31862486 - 31862530
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatg 153  Q
    ||||||||||||  |||||||||||| ||||| ||||||||||||    
T  31862486 tataagctataagatgttttcataagttatcctagagagcttatg 31862530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 123 - 242
Target Start/End: Original strand, 7730631 - 7730749
Alignment:
Q  123 tgttttcataagctatcccagagagcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatgcctgtagataagc 222  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |  || | ||| ||| ||  |||||||||||| ||||||||| |  ||||| |||    
T  7730631 tgttttcataagctatcctggagagcttatggacatgtcataagttgtttccttaagctctccaaaatagtctcacgcgtgtttatgtcattagat-agc 7730729  T
Q  223 tcaaataattcgacccaaac 242  Q
    |||||||| |||| ||||||    
T  7730730 tcaaataagtcgatccaaac 7730749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 8147885 - 8147942
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatggacatgtcataag 166  Q
    |||||| ||||  ||||||||||||||||||| ||||| |||||||||||||||||||    
T  8147885 tataagttatatactgttttcataagctatcctagagaacttatggacatgtcataag 8147942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 11262826 - 11262787
Alignment:
Q  123 tgttttcataagctatcccagagagcttatggacatgtca 162  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  11262826 tgttttcataagctatcctggagagcttatggacatgtca 11262787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 42866061 - 42866107
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    ||||||||||||  ||||||||||||||||||  |||||||||||||    
T  42866061 tataagctataagttgttttcataagctatccttgagagcttatgga 42866107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 29601082 - 29601041
Alignment:
Q  112 aagctataatctgttttcataagctatcccagagagcttatg 153  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  29601082 aagctataatctgttttcatatgctatcctagagaacttatg 29601041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 7368070 - 7367986
Alignment:
Q  146 agcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    |||||||  |||||||||||| |  |||||| | ||| ||  || |||||||| || |||||||||||||||||| |||||||||    
T  7368070 agcttataaacatgtcataagctgttttcatgagctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataa 7367986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 12650359 - 12650315
Alignment:
Q  111 taagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||||||||| |||||||||||| ||||||  |||||||||||||    
T  12650359 taagctataagctgttttcataacctatcctggagagcttatgga 12650315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 18512487 - 18512447
Alignment:
Q  190 tagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    ||||||||| |||||||||| | ||||||||||||||||||    
T  18512487 tagtctcacaagtgtttatgtcagtagataagctcaaataa 18512447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 3525143 - 3525197
Alignment:
Q  111 taagctataatctgttttcataagctatcccagagagcttatggacatgtcataa 165  Q
    |||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||    
T  3525143 taagctataagctgtttttatatgctatcctagagagcttatggacatgtcataa 3525197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 10016719 - 10016761
Alignment:
Q  188 aatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  10016719 aatagtctcacaagtgtttatgcctgtagataagctcaaataa 10016761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 9041514 - 9041456
Alignment:
Q  108 ttataagctataatctgttttcataagctatcccagagagcttatggacatgtcataag 166  Q
    ||||||||||||| ||||||| || |||||||   ||||||||||||||||||||||||    
T  9041514 ttataagctataagctgtttttattagctatcgtggagagcttatggacatgtcataag 9041456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 27857391 - 27857496
Alignment:
Q  125 ttttcataagctatcccagagagcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatgcctgtagataagctc 224  Q
    |||||||||||||||   ||||||||||||| |||||||||| |  |||||||| ||| ||  || ||| |||| ||||| |||| | |||||||| |||    
T  27857391 ttttcataagctatcatggagagcttatggagatgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataaactc 27857490  T
Q  225 aaataa 230  Q
    ||||||    
T  27857491 aaataa 27857496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 13907425 - 13907468
Alignment:
Q  123 tgttttcataagctatcccagagagcttatggacatgtcataag 166  Q
    |||||||||||||||||| | |||||||||| ||||||||||||    
T  13907425 tgttttcataagctatcctaaagagcttatgaacatgtcataag 13907468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 281925 - 281879
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||||||||||| |||| |||||||||||||| |||||||| |||||    
T  281925 tataagctataagctgtgttcataagctatcctagagagctcatgga 281879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 1401102 - 1401148
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||||||||||| ||||||||||||||||||   |||||||||||||    
T  1401102 tataagctataagctgttttcataagctatcatggagagcttatgga 1401148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 6647387 - 6647424
Alignment:
Q  116 tataatctgttttcataagctatcccagagagcttatg 153  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  6647387 tataatctgttttcataagctatcttagagagcttatg 6647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 4006707 - 4006751
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatg 153  Q
    ||||||||||||  ||||||||||||||||||| ||||| |||||    
T  4006707 tataagctataagttgttttcataagctatccctgagaggttatg 4006751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 28340921 - 28340865
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatggacatgtcataa 165  Q
    |||||||||||| ||||||||||||||||||| |||||||||||  || ||||||||    
T  28340921 tataagctataagctgttttcataagctatcctagagagcttatttacgtgtcataa 28340865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 21453287 - 21453327
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagct 149  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  21453287 tataagctataaactgttttcataagctatcctagagagct 21453327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 27517358 - 27517307
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatggacatgt 160  Q
    ||||||||| || ||||||||||||| |||||  ||||||||||||||||||    
T  27517358 tataagctacaaactgttttcataagttatcctggagagcttatggacatgt 27517307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 44290034 - 44289975
Alignment:
Q  171 tttcataatctcccctgaatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    |||||||| ||| | ||||||||||||| ||||| ||||||  |||||||||||||||||    
T  44290034 tttcataaactctcttgaatagtctcaccagtgtctatgccactagataagctcaaataa 44289975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 529458 - 529500
Alignment:
Q  188 aatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||    
T  529458 aatagcctcacaagtgtttatgccagtagataagctcaaataa 529500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 38010707 - 38010753
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||||||||||| |||||||||||| |||||| ||||| ||||||||    
T  38010707 tataagctataagctgttttcataatctatcctagagaacttatgga 38010753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 5369768 - 5369732
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagag 145  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  5369768 tatatgctataagctgttttcataagctatcccagag 5369732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 46056085 - 46056041
Alignment:
Q  111 taagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    ||||||||||  |||||||||||||||||||  ||||||||||||    
T  46056085 taagctataaattgttttcataagctatcccgtagagcttatgga 46056041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 47941316 - 47941360
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatg 153  Q
    ||||| |||||| |||||||||||||||||||| ||||| |||||    
T  47941316 tataatctataaactgttttcataagctatcccggagagtttatg 47941360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 38047919 - 38047875
Alignment:
Q  122 ctgttttcataagctatcccagagagcttatggacatgtcataag 166  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  38047919 ctgttttcataagctatcctggagagcttatggacatgtcataag 38047875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 40534206 - 40534238
Alignment:
Q  123 tgttttcataagctatcccagagagcttatgga 155  Q
    |||||||||||||||||||||||||||||||||    
T  40534206 tgttttcataagctatcccagagagcttatgga 40534238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 15003591 - 15003545
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    ||||||||||||   ||||||||||||||||| ||||||||||||||    
T  15003591 tataagctataagtggttttcataagctatccaagagagcttatgga 15003545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 39105457 - 39105487
Alignment:
Q  109 tataagctataatctgttttcataagctatc 139  Q
    |||||||||||||||||||||||||||||||    
T  39105457 tataagctataatctgttttcataagctatc 39105487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 9174910 - 9174954
Alignment:
Q  186 tgaatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    |||||||||||||||| ||||||||   |||||||||||||||||    
T  9174910 tgaatagtctcacgagcgtttatgctaatagataagctcaaataa 9174954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 29201528 - 29201572
Alignment:
Q  111 taagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||||||||| |||||||||||| ||||||  |||||||||||||    
T  29201528 taagctataagctgttttcataacctatcctggagagcttatgga 29201572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 43205302 - 43205348
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||||| |||||||||||||||||||||||| | |||||||||||||    
T  43205302 tataagatataatctgttttcataagctatcacggagagcttatgga 43205348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 18525209 - 18525173
Alignment:
Q  194 ctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    |||||||||||||||| ||||||||||||||||||||    
T  18525209 ctcacgagtgtttatgtctgtagataagctcaaataa 18525173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 1318269 - 1318371
Alignment:
Q  125 ttttcataagctatcccagagagcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatgcctgtagataagctc 224  Q
    |||||| |||| |||| ||||||||| |||||||||||||||||  |||||||| ||| |   || |||||||| |||| ||||| | |||||||| |||    
T  1318269 ttttcacaagccatcctagagagcttctggacatgtcataagatgttttcataagctctcacaaacagtctcacaagtgcttatg-cagtagataatctc 1318367  T
Q  225 aaat 228  Q
    ||||    
T  1318368 aaat 1318371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 10884592 - 10884554
Alignment:
Q  115 ctataatctgttttcataagctatcccagagagcttatg 153  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  10884592 ctataagctgttttcataagctatcctagagagcttatg 10884554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 22681262 - 22681216
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||||||||||| |||||||||||| |||||| ||||| ||||||||    
T  22681262 tataagctataagctgttttcataatctatcctagagaacttatgga 22681216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 9556235 - 9556276
Alignment:
Q  112 aagctataatctgttttcataagctatcccagagagcttatg 153  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||    
T  9556235 aagctataaactgttttcataagctatcctagaaagcttatg 9556276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 28803583 - 28803526
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatggacatgtcataag 166  Q
    ||||||||| ||  ||||||| ||| ||||||  ||||||||||||||||||||||||    
T  28803583 tataagctacaagttgttttcttaaactatcctggagagcttatggacatgtcataag 28803526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 13736366 - 13736326
Alignment:
Q  113 agctataatctgttttcataagctatcccagagagcttatg 153  Q
    |||||||| ||||||||||||||||| | ||||||||||||    
T  13736366 agctataagctgttttcataagctatactagagagcttatg 13736326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 29430812 - 29430896
Alignment:
Q  146 agcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    |||| |||||||||||||||| |  ||||||||  ||  |  ||||||| ||| |||||||||| | ||||||||||||||||||    
T  29430812 agctaatggacatgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagtagataagctcaaataa 29430896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 21872348 - 21872291
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatggacatgtcataag 166  Q
    ||||||||||||  ||||||||||||||||||  || || ||||||||||||||||||    
T  21872348 tataagctataagttgttttcataagctatcctggaaagtttatggacatgtcataag 21872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 25964438 - 25964480
Alignment:
Q  111 taagctataatctgttttcataagctatcccagagagcttatg 153  Q
    |||||||||| |||||||||||||||||||| || ||||||||    
T  25964438 taagctataagctgttttcataagctatcccggaaagcttatg 25964480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 38462274 - 38462320
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||| ||||||| ||||||||||||||||||| ||| ||||||||||    
T  38462274 tatatgctataaactgttttcataagctatccaagatagcttatgga 38462320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 24887360 - 24887315
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgg 154  Q
    ||||||||| || |||||||||||||||||||  ||||||||||||    
T  24887360 tataagctaaaagctgttttcataagctatcctggagagcttatgg 24887315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 2304287 - 2304203
Alignment:
Q  146 agcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    |||||||| |||||||||||| | |||||||||| || |   |||||| |||| |||||||||||  |||||| || ||||||||    
T  2304287 agcttatgaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatgctagtagatcagttcaaataa 2304203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 34760934 - 34760990
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatggacatgtcataa 165  Q
    |||||||||||| ||||||||||| || ||| | ||||||||||  |||||||||||    
T  34760934 tataagctataaactgttttcataggcgatcactgagagcttataaacatgtcataa 34760990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 2035476 - 2035351
Alignment:
Q  117 ataatctgttttcataagctatcccagagagcttatggacatgtcataagattctttcataatctcccctgaatagtctcacgagtgtttatgcctgtag 216  Q
    |||| |||||||||||||||||||  | ||||||||||| |||||||||| |  ||||||||  || | |||| |||||| | | || ||||||| |||     
T  2035476 ataagctgttttcataagctatccaggtgagcttatggatatgtcataagctattttcataagttctcttgaacagtctctcaaatgcttatgccagtat 2035377  T
Q  217 ataagctcaaataattcgacccaaac 242  Q
    |||| || ||||||||| | ||||||    
T  2035376 ataatcttaaataattcaatccaaac 2035351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 43420357 - 43420396
Alignment:
Q  191 agtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  43420357 agtctcacaagtgtttatgtctgtagataagctcaaataa 43420396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 6279392 - 6279438
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||||||| ||| || |||||||||||||||| ||||||||||||||    
T  6279392 tataagctttaaactattttcataagctatcctagagagcttatgga 6279438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 27738257 - 27738211
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    ||||||||||||| |||||||||||||||| |  |||||||||||||    
T  27738257 tataagctataatttgttttcataagctatacaggagagcttatgga 27738211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 29793672 - 29793630
Alignment:
Q  188 aatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    ||||||||||| |||||||||| | ||||||||||||||||||    
T  29793672 aatagtctcacaagtgtttatgtcagtagataagctcaaataa 29793630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 52013979 - 52014025
Alignment:
Q  184 cctgaatagtctcacgagtgtttatgcctgtagataagctcaaataa 230  Q
    |||||||||||||||  |||||||||||  |||||||||||||||||    
T  52013979 cctgaatagtctcacacgtgtttatgccaatagataagctcaaataa 52014025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 11997110 - 11997057
Alignment:
Q  102 gtttccttataagctataatctgttttcataagctatcccagagagcttatgga 155  Q
    |||||| ||||||||||||| ||||||| |||| ||||| |||||| |||||||    
T  11997110 gtttccctataagctataatttgttttcttaagttatcctagagaggttatgga 11997057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 15784828 - 15784865
Alignment:
Q  123 tgttttcataagctatcccagagagcttatggacatgt 160  Q
    ||||||||||||||||| || |||||||||||||||||    
T  15784828 tgttttcataagctatctcaaagagcttatggacatgt 15784865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 25479574 - 25479618
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatg 153  Q
    |||| |||||||  |||||||||||||||||| ||||||||||||    
T  25479574 tataggctataagttgttttcataagctatcctagagagcttatg 25479618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 50319277 - 50319309
Alignment:
Q  123 tgttttcataagctatcccagagagcttatgga 155  Q
    |||||||||||||||||| ||||||||||||||    
T  50319277 tgttttcataagctatcctagagagcttatgga 50319309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 35871 - 35815
Alignment:
Q  109 tataagctataatctgttttcataagctatcccagagagcttatggacatgtcataag 166  Q
    |||||||||||  ||| |||||||| ||||||  ||||||||||||||||||||||||    
T  35871 tataagctatag-ctgctttcataaactatcctggagagcttatggacatgtcataag 35815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University