View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_25 (Length: 382)
Name: NF16123_high_25
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 60 - 336
Target Start/End: Original strand, 1418253 - 1418529
Alignment:
| Q |
60 |
ataattccgttatttattagttctatactaattaattatttacatgttattatatgcagaagttattatcgttgcacacataacaattgtcgggtgnnnn |
159 |
Q |
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| T |
1418253 |
ataattccgttatttattagtactatactaattaattatttacatgttattatatgcagaagttattatcgttgcacacataacaattgtcgggtgaaaa |
1418352 |
T |
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| Q |
160 |
nnngagttgaacgactctcagaagattgtcgtatggtaataaccacttatgaaggcagacacaatcactctccttgtgacgactctaattcttctgaaca |
259 |
Q |
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| T |
1418353 |
aaagagttgaacgactctcagaagattgtcgtatggtaataaccacttatgaaggcagacacaatcactctccttgtgacgactctaattcttctgaaca |
1418452 |
T |
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| Q |
260 |
cgaatgttttacgtctttttgatccaacaatgtcgttccaataaaacaattatatatgttttgattaattattagtt |
336 |
Q |
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| T |
1418453 |
cgaatgttttacgtctttttgatccaacaatgtcgttccaataaaacaattatatatgttttgattaattattagtt |
1418529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 1418170 - 1418239
Alignment:
| Q |
8 |
catcatgcatgtctttaaatatgctttatttcagctatttattttgttaggaataattccgttatttatt |
77 |
Q |
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| T |
1418170 |
catcatgcatgtctttaaatatgctttatttcagctatttattttgttaggaatatttccgttatttatt |
1418239 |
T |
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