View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16123_high_27 (Length: 353)
Name: NF16123_high_27
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16123_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 41085765 - 41086094
Alignment:
| Q |
16 |
atcatccaacaccatctcaataatcaattaggtcaaattcaaacttgtttgttgagagcctgagattgatctgttaaatattgtagaactcaaatgaacc |
115 |
Q |
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| T |
41085765 |
atcatccaacaccatctgaataatcaattaggtcaaattcaaacttgtttgttgagagcctgagattgatctgcaaaatattatagaactcaaatgaacc |
41085864 |
T |
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| Q |
116 |
ataaactcg---nnnnnnnnnnnnnnnnnggggccttaattagacttgt--------atactcacgataaatgggaaaataaaaaaggtgataattaagg |
204 |
Q |
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| T |
41085865 |
ataaactcgaaaaaaagaataaaaaaaaacgggccttaattagacttgtatgtatgtatactcacgataaatgggaaaataaaaaagggga----taagg |
41085960 |
T |
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| Q |
205 |
atggtttgataaatttgatggacagcagtacagtacatatacaaggcatacc---cctctttcttcagcggcataattgttatctatgtggtatgatatg |
301 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
41085961 |
atgg-ttgataaatttgatggacagcagtacagtacatatacaaggcatacccctcctctttcttcagcagcataattgtta-gtatgtggtatgatatg |
41086058 |
T |
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| Q |
302 |
atgttgctctctccattattattttacggatcatat |
337 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41086059 |
atgttgctctctccattattattttacggatcatat |
41086094 |
T |
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