View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16123_high_30 (Length: 342)

Name: NF16123_high_30
Description: NF16123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16123_high_30
NF16123_high_30
[»] chr3 (4 HSPs)
chr3 (16-192)||(50983915-50984091)
chr3 (16-192)||(51087049-51087225)
chr3 (190-324)||(50984123-50984257)
chr3 (190-324)||(51087257-51087391)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 50983915 - 50984091
Alignment:
Q  16 atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgcatattttgttcttgattgtgtgctttgtttattccattttgcctt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  50983915 atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgtatattttgttcttgattgtgtgctttatttattccattttgcctt 50984014  T
Q  116 ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttcctttttgttccattccctttagattc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50984015 ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttccgttttgttccattccctttagattc 50984091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 51087049 - 51087225
Alignment:
Q  16 atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgcatattttgttcttgattgtgtgctttgtttattccattttgcctt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  51087049 atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgtatattttgttcttgattgtgtgctttatttattccattttgcctt 51087148  T
Q  116 ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttcctttttgttccattccctttagattc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51087149 ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttccgttttgttccattccctttagattc 51087225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 190 - 324
Target Start/End: Original strand, 50984123 - 50984257
Alignment:
Q  190 ttccagtatttatagatattttttgaatgtacagaagacattacaaatgatgagcttgtacataattggtattcgagggctcctacatccatatatatac 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50984123 ttccagtatttatagatattttttgaatgtacagaagacattacaaatgatgagcttgtacataattggtattcgagggctcctacatccatatatatac 50984222  T
Q  290 tacctgacaaaagcaaattgtctaactccccattt 324  Q
    |||||||||||||||||||||||||||||||||||    
T  50984223 tacctgacaaaagcaaattgtctaactccccattt 50984257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 190 - 324
Target Start/End: Original strand, 51087257 - 51087391
Alignment:
Q  190 ttccagtatttatagatattttttgaatgtacagaagacattacaaatgatgagcttgtacataattggtattcgagggctcctacatccatatatatac 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51087257 ttccagtatttatagatattttttgaatgtacagaagacattacaaatgatgagcttgtacataattggtattcgagggctcctacatccatatatatac 51087356  T
Q  290 tacctgacaaaagcaaattgtctaactccccattt 324  Q
    |||||||||||||||||||||||||||||||||||    
T  51087357 tacctgacaaaagcaaattgtctaactccccattt 51087391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University